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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_02845.1_g00002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MYB |
Protein Properties |
Length: 358aa MW: 40616.9 Da PI: 8.6483 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_02845.1_g00002.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53 | 8e-17 | 105 | 151 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT Ed llv++v+ +G++ W+ Ia++++ gR +kqc++rw+++l
Rsa1.0_02845.1_g00002.1 105 KGQWTSGEDRLLVQLVEHHGTKKWSHIAKMLQ-GRVGKQCRERWHNHL 151
799*****************************.*************97 PP
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2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 158 | 199 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ W++eEd +l+ a+k+ G++ W+ Iar+++ Rt++ +k++w+
Rsa1.0_02845.1_g00002.1 158 DGWSEEEDMILISAHKEIGNK-WAEIARKLP-ERTENTIKNHWN 199
56*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 358 aa
Download sequence Send
to blast |
MTCSTSSPLK DASKILHAPR EITMWGNDQP QGTIFEYKSL FNLAIADSNL YDTSKPMGIW 60 SANEDDVMNQ CQNNQIVIKT DQIKKDKRFQ LRRGCKPMKK ANIIKGQWTS GEDRLLVQLV 120 EHHGTKKWSH IAKMLQGRVG KQCRERWHNH LRPDIKKDGW SEEEDMILIS AHKEIGNKWA 180 EIARKLPERT ENTIKNHWNA TKRRQYSRRS KGKDETSLAI CSSTLQNYIR SITYNDDTLM 240 TSATFHANAN ENTKFSPKHM RGKGKVLTVA ASDYAKNNDH ENECKYIVDG VMNLGLDDGK 300 NTSSSAVTST SGSTSRPGSG LTVEFDESMT DTWMVMHGCD EVMMNEIALL ELISDGRL
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189633 | 0.0 | AC189633.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004A14, complete sequence. |