PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02837.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 429aa    MW: 48420.6 Da    PI: 4.7787
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02837.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30267324259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgy+WrKYG+K v+g+++prsY++Ct+ gC+vkk+ver a+d k++++tY g+Hnh+
  Rsa1.0_02837.1_g00003.1 267 DDGYQWRKYGRKIVNGNPNPRSYFKCTYGGCNVKKHVERGADDVKLLVTTYDGKHNHP 324
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-31251326IPR003657WRKY domain
PROSITE profilePS5081131.915261326IPR003657WRKY domain
SuperFamilySSF1182908.11E-26261326IPR003657WRKY domain
SMARTSM007747.6E-34266325IPR003657WRKY domain
PfamPF031064.0E-24267324IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MMFWTPSKMS DCDETIRAIL EQPDNGLNPI SQIFPQTNLS TDNQSEQRSS LERVSSRIGF  60
NVPPLETESI MSPLAASRSQ TNVPSPLIAI SPEFSSSAQL QSPKMFSNSF SQHITQYPIA  120
NDGPPEMVGS SGGDYVTPMI FNNDVPHQPM NFDHMPHHEG FYDIPAEESV YVPSHESHVD  180
FIGAPLATTF ESDEVAAETD IMNIISLDSE DEEYKEDENV DEKDDSVDEL PPRKRRKYEV  240
SDMFGAKRTR KEERVILRME CEEDNPDDGY QWRKYGRKIV NGNPNPRSYF KCTYGGCNVK  300
KHVERGADDV KLLVTTYDGK HNHPIPTGRS SNRSGPRNRS GFSASQPPRL RKLPSSSSAC  360
QYCYASLEPH PDMTQLYMTG LSKLPSFPVN NHGFMYGNDE QNIDRVIPDG TEVYNGIKDR  420
LFPNFGYNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-242623261377Probable WRKY transcription factor 4
2lex_A2e-242623261377Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02837.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931440.0KM593144.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY41) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450178.10.0PREDICTED: probable WRKY transcription factor 10
SwissprotQ9LG051e-117WRK10_ARATH; Probable WRKY transcription factor 10
TrEMBLA0A078FEQ40.0A0A078FEQ4_BRANA; BnaC03g70660D protein
STRINGBra030847.1-P0.0(Brassica rapa)
STRINGBo3g185420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102991733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.11e-116WRKY DNA-binding protein 10
Publications ? help Back to Top
  1. Li J,Nie X,Tan JL,Berger F
    Integration of epigenetic and genetic controls of seed size by cytokinin in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(38): p. 15479-84
    [PMID:24003120]
  2. Fatihi A,Zbierzak AM,Dörmann P
    Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds.
    Plant Physiol., 2013. 163(2): p. 973-85
    [PMID:24014578]
  3. Liu P, et al.
    Arabidopsis RAN1 mediates seed development through its parental ratio by affecting the onset of endosperm cellularization.
    Mol Plant, 2014. 7(8): p. 1316-1328
    [PMID:24719465]
  4. Xiao YG,Sun QB,Kang XJ,Chen CB,Ni M
    SHORT HYPOCOTYL UNDER BLUE1 or HAIKU2 mixepression alters canola and Arabidopsis seed development.
    New Phytol., 2016. 209(2): p. 636-49
    [PMID:26389843]
  5. Meng LS,Wang YB,Loake GJ,Jiang JH
    Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade.
    Front Plant Sci, 2016. 7: p. 1645
    [PMID:27857719]
  6. Meng LS,Wang YB,Loake GJ,Jiang JH
    Corrigendum: Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade.
    Front Plant Sci, 2017. 8: p. 1073
    [PMID:28616014]