PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02804.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 106aa    MW: 12168.2 Da    PI: 10.0109
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02804.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT+ Ed++l++ ++++G  +W++ ++  g+ R++k+c++rw +yl
  Rsa1.0_02804.1_g00002.1 14 RGPWTPAEDQILINHIHLYGHSNWRALPKLAGLLRCGKSCRLRWINYL 61
                             89******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129421.13965IPR017930Myb domain
SMARTSM007173.4E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
SuperFamilySSF466894.21E-231589IPR009057Homeodomain-like
CDDcd001672.56E-111661No hitNo description
PROSITE profilePS500904.25262106IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.6E-96588IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MGRAPCCEKM GMKRGPWTPA EDQILINHIH LYGHSNWRAL PKLAGLLRCG KSCRLRWINY  60
LRPGIKRGNF TPKEEQTIIN LHEVLGNRCI FLLSRENYSS ICSTTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-15128825100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02804.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195752e-82AY519575.1 Arabidopsis thaliana MYB transcription factor (At2g31180) mRNA, complete cds.
GenBankBT0248532e-82BT024853.1 Arabidopsis thaliana At2g31180 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440797.18e-62PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX81e-57MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A1J3D0475e-57A0A1J3D047_NOCCA; Myb-related protein Myb4
TrEMBLA0A1J3HQA04e-57A0A1J3HQA0_NOCCA; Myb-related protein Myb4
STRINGBra018267.1-P2e-57(Brassica rapa)
STRINGXP_006410249.12e-57(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.16e-60myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]