PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02727.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 870aa    MW: 95360.8 Da    PI: 8.165
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02727.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.71.7e-10165216154
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                              k ++ W + L ++F +a+e++ G +    k  l+ m+++ Lt++hv+S LQkYR
  Rsa1.0_02727.1_g00004.1 165 KSKITWMSSLENQFSKAIEHI-GVHSYAYKD-LKYMNLNHLTRTHVASKLQKYR 216
                              6799*****************.555555566.79******************** PP
2Response_reg73.21.1e-24181261108
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vdD+++ ++++ ++l++  y +v +a d++eal +l+ +   +D++++D  mpg +G +l k+i+ e  +lp+iv++a  ++e
  Rsa1.0_02727.1_g00004.1  18 VLVVDDDRVSLSVISNMLKSPSY-IVMTANDSSEALSTLRGQCnnIDVVITDYHMPGFNGGQLKKRINDEFGNLPVIVISADMNNE 102
                              89*********************.***************555445**********************99999************** PP

                              HHHHHHHTTESEEEESS--HHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelv 108
                                +e l+ Ga+ f  Kp++p++l 
  Rsa1.0_02727.1_g00004.1 103 IEQETLSSGAMCFMKKPVKPNDLD 126
                              *********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.1E-296133No hitNo description
SuperFamilySSF521724.84E-2814136IPR011006CheY-like superfamily
SMARTSM004489.6E-1816129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.21817133IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.8E-2218127IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.61E-2119125No hitNo description
SuperFamilySSF466891.29E-6163221IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-11163221IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-9165217IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MDFDLPSYHQ STHKNITVLV VDDDRVSLSV ISNMLKSPSY IVMTANDSSE ALSTLRGQCN  60
NIDVVITDYH MPGFNGGQLK KRINDEFGNL PVIVISADMN NEIEQETLSS GAMCFMKKPV  120
KPNDLDTICK HALKYKINGG SKEIQKTNST SNPDDGSSGS KAKRKSKITW MSSLENQFSK  180
AIEHIGVHSY AYKDLKYMNL NHLTRTHVAS KLQKYRKFWK KVKDESAEKA RKAMISNTRS  240
SCYINPQRSY NYKTSLSNKN LCNHQRGYGL GQYNHTMNNN AGFHGSVNFM NRRPTNNSQT  300
VSNFLPRRGS LGVLNGIKEE MGSMSGTSQE SQAHKFGQYG TTSGVLGMNS NLSTGTMGSN  360
YAGIRIGEKG DVFGPDGLRV YVKENASLGG MRVTGNDNGS LGGIRLHATS NGSFGGARVQ  420
GNSNYGKVHG TSNVSLGGTR VQGNDIGFLN EIRVHGTSSG SLGGTRVQGN DNGFLDEIRV  480
HGNRNGSFGE IRVHGNDSFG GLRVNSTDNG NGSLDRVIVH GNSNVNGSLG GINVHGTGNG  540
SLGGIQVHGN ASLGENLSGM NWNFNNNNMM SNHGSSTGRF PSALSSFFDN KDQSHNYLKA  600
QTSGVVPVLE NPIISNNYHG INEFYPDTIN SEFDHNQQQG KATGENPEVP TAYPLENLSN  660
GNYNEETLNT VAPNSEMYFP TDQNMIITNQ EYGVEDLMEL PLSFDQWDAR MISKANFDVL  720
PRLNEIKYAS GILDELLYLS VPSERTQVSL WSYGVRIRES SPGECILSWE FCTRRHEELL  780
PRRLVNRLLQ VAENCQSTIS GGSGQQQKSL SGQNMNCNVS MGGNRTDYGL VMETPNTTNR  840
FRGIKGLDQS QNQEVMVSNT SINFENKGGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02727.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488143.10.0PREDICTED: hornerin-like
TrEMBLA0A3P6AT360.0A0A3P6AT36_BRAOL; Uncharacterized protein
STRINGBo3g108010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1654279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27070.11e-27response regulator 13