PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02722.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 666aa MW: 72430.5 Da PI: 5.9386 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.6e-08 | 24 | 51 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r rWT++E++++++a +++G W +I Rsa1.0_02722.1_g00004.1 24 RERWTEDEHDRFLEALRLYGRA-WQRIEG 51 78******************88.**9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.16E-6 | 12 | 51 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-8 | 22 | 54 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.2E-5 | 24 | 55 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00672 | 26 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence Send to blast |
MDTNTSGDEL LTKARKPYTI TKQRERWTED EHDRFLEALR LYGRAWQRIE GNILGQRLLF 60 RSDNLLSSED ATGWTGNEVI VFVYPRTIRL EKEAEAKGIP VCQALNIEIP PPRPKRKPNT 120 PYPRKPGPSS SQAPSAKLAS SSQCNQAFLD LEKVPINEET STGKENQDDN CSGVSTVNKF 180 PLPKKPEPSL RKESADNGTS KASNVENMVQ DLPEKNKDRV ADSARNYPWH FPADFVNGNG 240 AKCAQFHPPP GMVSQDLMFC PMGDRVHGHV NLPATTTSSA TTTTTTTSQQ ACPSQDVYRS 300 FLHFSSTFPN LIMSSLLQNP AAHAAATFAA SAWPYSNVGN SGDSSTQMSS SPPPPSIAAI 360 AAATVAAATA WWASHGLIPV CAPPPPTPVT CLPLPTFAVP TPSMEKMDTV KSNQEPLEKQ 420 NTALQDQKMA SKSPASSSDD SEETGITKLN AADSKTNRDK EEVIVDAAAA DALHDPNASP 480 KKKLVDRSSC GSNTPSGSDA ETDALDKMEK DNEDVKEADA NQPSVIELSN RRSKIRDNNN 540 NQTTDSWKEV SQGGRKAFQA LFARQRLPQS FSPPQVEDNV NGKQSDTSMP MAPDLNKIQG 600 SCDADQESGV MMIGDGQGKS LKTRQSGFKP YKRCSMEVKE SQDGNTNNQS DEKVCKRIRL 660 EGEAST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the circadian clock. Binds to the promoter region of APRR1/TOC1 and TCP21/CHE to repress their transcription. Represses both CCA1 and itself. {ECO:0000269|PubMed:12015970, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:9657154}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02722.1_g00004.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with peak levels occurring around 1 hour after dawn. Up-regulated by APRR1/TOC1 and transiently by light treatment. Down-regulated by APRR5, APRR7 and APRR9. {ECO:0000269|PubMed:12574129, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19286557, ECO:0000269|PubMed:20233950, ECO:0000269|PubMed:9657154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490458.1 | 0.0 | PREDICTED: protein LHY | ||||
Refseq | XP_018490465.1 | 0.0 | PREDICTED: protein LHY | ||||
Refseq | XP_018490473.1 | 0.0 | PREDICTED: protein LHY | ||||
Refseq | XP_018490479.1 | 0.0 | PREDICTED: protein LHY | ||||
Swissprot | Q6R0H1 | 0.0 | LHY_ARATH; Protein LHY | ||||
TrEMBL | A0A078FL85 | 0.0 | A0A078FL85_BRANA; BnaC05g00840D protein | ||||
STRING | Bo5g002760.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5576 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.3 | 0.0 | MYB_related family protein |