|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Rsa1.0_02672.1_g00006.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
Family |
WRKY |
Protein Properties |
Length: 480aa MW: 51999.5 Da PI: 8.2148 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_02672.1_g00006.1 | genome | RGD | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 109 | 2.2e-34 | 218 | 274 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
dDgynWrKYGqK+vkgsefprsYY+Ct +gCpvkkkvers d++v+ei+Y+g+Hnhe
Rsa1.0_02672.1_g00006.1 218 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSL-DGQVTEIIYKGQHNHE 274
8****************************************.***************8 PP
|
2 | WRKY | 105.5 | 2.8e-33 | 377 | 435 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
Rsa1.0_02672.1_g00006.1 377 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCGVRKHVERAATDPKAVVTTYEGKHNHD 435
59********************************************************7 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 480 aa
Download sequence Send
to blast |
MSEKEELPST SKSAGALSRP TLSLPPRPFS EMFVYGGGVG FSPGPMTLVS NMFSDTDESS 60 RSFSQLLAGV VMPSPAAGSE GNNNSNSSSS GVVDVVDPRF KQSRPAGLMV SQSPSMFTAP 120 PGLSPAMRLD SPSFLGLFSP LQGSYGMTHQ QALAQVTAQA VQANAINMQQ PQTDENPPSS 180 QALQSFSSDQ AQNPTSDHIT IIEQRLSQRP LNVDRPADDG YNWRKYGQKQ VKGSEFPRSY 240 YKCTNPGCPV KKKVERSLDG QVTEIIYKGQ HNHEPPQNTK RGNNKDSTAN LNGSSVNNKT 300 TREQHEAASQ ATTEQMSEAS DSEEVGNGES GVRDEPDAKR RSTDVRVLEQ AAAVAASHRT 360 VAEPRIIVQT TSEVDLLDDG YRWRKYGQKV VKGNPYPRSY YKCTTQGCGV RKHVERAATD 420 PKAVVTTYEG KHNHDPPAAK SSSHAATAAA AQLRHGGLAN LNQQHQQPVA CLRLKEEQTI
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KC246567 | 0.0 | KC246567.1 Brassica napus WRKY transcription factor 4.1 (WRKY4.1) mRNA, complete cds. |