PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02655.1_g00005.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 294aa MW: 32748.8 Da PI: 9.3858

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02655.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.6	4.1e-33	156	212	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e e kl +ksrkpylheSRh+hA+rRpRg+gGrF Rsa1.0_02655.1_g00005.1 156 QEPVYVNAKQYQAILRRRQARAKAELEMKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 212 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.2E-36	154	215	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.414	155	215	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.9E-29	157	212	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.6E-24	158	180	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	160	180	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.6E-24	189	212	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010262	Biological Process	somatic embryogenesis
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MHSKSDGGNH QIVSEAVHHH QTSSINSLNP WQRAAAACNA NSFVEEAEGD KSIAFESTTN 60 GSKSPPSNRD DNSNKESPQV TNSSPQQSAG DYSEKSQQLV VHHGITPPPH PQLGWTSSNP 120 YQDPYYAGMM GTYPLAYVPY GGMTHSRMPL PPEVAQEPVY VNAKQYQAIL RRRQARAKAE 180 LEMKLIKSRK PYLHESRHQH AMRRPRGTGG RFAKKTNTEA SQPKAREKSN GSRTQSPTSS 240 HSDQPEAWND EYRTQSEEMQ SSASKRREEA EDCSGQQWNS ISSNHPSQAR LAIK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-19	156	212	2	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02655.1_g00005.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018491807.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-9 isoform X3
Swissprot	Q945M9	1e-141	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A0D3CHV5	1e-171	A0A0D3CHV5_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6ELK8	1e-171	A0A3P6ELK8_BRAOL; Uncharacterized protein
STRING	Bo5g105110.1	1e-172	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13268	18	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	1e-143	nuclear factor Y, subunit A9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]