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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02605.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 252aa MW: 28024.3 Da PI: 8.2356 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.3e-14 | 89 | 133 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+Wk I++ + k Rt q+ s+ qky Rsa1.0_02605.1_g00009.1 89 PWTEEEHKLFLLGLQKVGKGDWKGISKNFVKSRTSTQVASHAQKY 133 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.331 | 82 | 138 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.52E-17 | 84 | 139 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-17 | 85 | 136 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.5E-10 | 86 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-11 | 88 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.37E-9 | 89 | 134 | No hit | No description |
Pfam | PF00249 | 3.2E-11 | 89 | 133 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MADGSSSCTS ESTVDGSCIS REIMLFGVRV VLDPMRKSVS LNNLSEYEQT EEIPKIMAED 60 EKNKTSSGYA SADEAVPITS SRERKRGVPW TEEEHKLFLL GLQKVGKGDW KGISKNFVKS 120 RTSTQVASHA QKYFLRRSNL NRRRRRSSLF DMTTDTVMPM KEDQVLVQEN TPQQEVNNFS 180 THPVMQVFPS GDNASGTQSY GHHLSSSNLI NLVPYTFQAR PEPISLSLTL ASSNLNEPSS 240 SRHSAFNTIG VA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00236 | DAP | Transfer from AT1G74840 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02605.1_g00009.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018445545.1 | 1e-159 | PREDICTED: transcription factor MYB1R1-like | ||||
Refseq | XP_018445564.1 | 1e-159 | PREDICTED: transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 6e-56 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A0D3D0Q6 | 1e-120 | A0A0D3D0Q6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GE64 | 1e-120 | A0A3P6GE64_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g119010.1 | 1e-121 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2461 | 26 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74840.1 | 1e-109 | MYB_related family protein |
Publications ? help Back to Top | |||
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