PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02593.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 254aa    MW: 28817 Da    PI: 8.0481
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02593.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.87.8e-3232140197
                              EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                              f+k ltpsdv+k++rlv+pk++ae+h             + +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L
  Rsa1.0_02593.1_g00005.1  32 FEKSLTPSDVGKLNRLVIPKQHAEKHfplnnasddvaaAETTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHL 117
                              99*******************************99999777889****************************************** PP

                              -TT-EEEEEE-SSSEE..EEEEE CS
                       B3  75 kegDfvvFkldgrsefelvvkvf 97 
                               +gD+v F++++ +  + +++++
  Rsa1.0_02593.1_g00005.1 118 HAGDVVFFQRHRFDLHRVFIGWR 140
                              *********54325555566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-4126151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-3229144IPR015300DNA-binding pseudobarrel domain
CDDcd100173.57E-2931136No hitNo description
PROSITE profilePS5086313.0732141IPR003340B3 DNA binding domain
PfamPF023626.4E-2932141IPR003340B3 DNA binding domain
SMARTSM010197.5E-2332143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSGNCYPREI HHTTPSLHHR QNDAVVDREY LFEKSLTPSD VGKLNRLVIP KQHAEKHFPL  60
NNASDDVAAA ETTEKGMLLS FEDESGKCWK FRYSYWNSSQ SYVLTKGWSR YVKDKHLHAG  120
DVVFFQRHRF DLHRVFIGWR KRGEVSSPST VSVVSQDARV NTTTYWSNGL TTPYRQVHAS  180
TSSYPNIHQE YSHYGAVAET PTVVAGSSRT VRLFGVNLEC HGDVAEPPPC PDGYSGQQFY  240
YYSTPHPMVG DGRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-48251451116B3 domain-containing transcription factor NGA1
5os9_B3e-48251451116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02593.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439249.10.0PREDICTED: B3 domain-containing protein At3g11580-like isoform X1
SwissprotQ8RYD31e-129Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A398AUU71e-169A0A398AUU7_BRACM; Uncharacterized protein
TrEMBLM4FIU41e-169M4FIU4_BRARP; Uncharacterized protein
STRINGBra041023.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-131B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]