PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02524.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 124aa MW: 14442.3 Da PI: 5.1881 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 44.7 | 3.7e-14 | 43 | 110 | 5 | 70 |
HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSB CS HSF_DNA-bind 5 klyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeek 70 +ye+++d+++++++sw ++g+sf+v++e+ef +vLp+ + + ++SF+ + + g++kv+++ + Rsa1.0_02524.1_g00003.1 43 DVYEMVNDPSTDSVVSWGDSGKSFIVWKESEFLGDVLPRclSYDYKDMTSFTTKFHALGYNKVEESVH 110 68*************************************667999******************98763 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.4E-5 | 36 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.35E-13 | 39 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.7E-16 | 41 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.9E-12 | 43 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MDRDSNDGRI PLSSLSCYKE MCRLADKDYH FSTIRRPPLL FRDVYEMVND PSTDSVVSWG 60 DSGKSFIVWK ESEFLGDVLP RCLSYDYKDM TSFTTKFHAL GYNKVEESVH WEYTANYLVR 120 GLLS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02524.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018484778.1 | 4e-85 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | A0A3P6CSF3 | 3e-64 | A0A3P6CSF3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DKG7 | 4e-64 | M4DKG7_BRARP; Uncharacterized protein | ||||
TrEMBL | M4DKG9 | 4e-64 | M4DKG9_BRARP; Uncharacterized protein | ||||
STRING | Bra016996.1-P | 6e-65 | (Brassica rapa) | ||||
STRING | Bra016998.1-P | 6e-65 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13231 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 4e-16 | heat shock factor 1 |