PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02506.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 493aa    MW: 53254.3 Da    PI: 6.128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02506.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09315363355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Rsa1.0_02506.1_g00007.1 315 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 363
                              58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-17310381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.77E-11310367No hitNo description
PROSITE profilePS5088815.478312362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-17313380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6315363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10318368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDVSEKDELR NGDTTANYDD ESANNNNPPP DWRVSGSNQV SAPNDSYPPE NQMMDSFGQT  60
LWYDPTNVQA VGYGGFNGVN NASSSSSSFR GNNNMDRSLE MGWNLLPPKG NGMFLPNASS  120
FLPPPSMAQF PADSGFIERA ARFSLFSGGS FSDMMNHHHQ QQQQQQPLGN PTESIGLFLP  180
SNVGVAHNDA SAAMKESNVV RSSEQGNKQN VPGSGNVSED TQSSGGGGGN GQKGGEASSK  240
GFDSKKRKRN RQSSEAGQSH RSQQSEEEAD NNGDKKRNDE QSPKSQGNKT NSGKQTSDPK  300
DGYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ  360
SLQRQVEFLS MKLATVNPQM DFNLEGLLAK DALQLRAGTS SATPFPQNMP MVYPPLPHGF  420
MQQTLSSMGR NISSPLSPIN GGYKRQEANG WEGDLQNVIQ INYGAGDVPP DSQAAAAAAT  480
AASLPSSNMK VEP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02506.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3189370.0AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451960.10.0PREDICTED: transcription factor bHLH49-like isoform X3
SwissprotQ9CAA90.0BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A3N6Q7W70.0A0A3N6Q7W7_BRACR; Uncharacterized protein
STRINGBra004348.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.30.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]