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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02463.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 316aa MW: 35471.1 Da PI: 6.9952 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.5 | 2.4e-27 | 120 | 181 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g++fpr+Y+rCt++ gC+++k+v+rs+edp ++ei+Y+g H ++ Rsa1.0_02463.1_g00001.1 120 LDDGFSWRKYGQKDILGAKFPRGYHRCTYRksqGCEATKQVQRSNEDPVLFEIIYRGIHSCS 181 59***************************98889*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.31 | 115 | 179 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-25 | 117 | 182 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.18E-23 | 119 | 182 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-38 | 120 | 182 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-24 | 121 | 180 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MERNSNGREW EKMKKELNEL MTEGRDYAHQ LKSQLGSTSS QESREHLAKK ILESYHKSLT 60 IMNYSGELEQ VSPHSHGGGS PKSDDSDHQE PHIIQSSKKS MPRWTQKVRI APGVVIERAL 120 DDGFSWRKYG QKDILGAKFP RGYHRCTYRK SQGCEATKQV QRSNEDPVLF EIIYRGIHSC 180 SQASAVGSTI PVQVLEPNQA HEQENLEIMT TSLDTSHHNY NHQAHLHQSL HYPLPSTQNL 240 ESNNVLLQQK DHNIGFLGST SYSDLGTNVN YHFLAPHDAG SASHSTINSL TTAGLESPFE 300 SFSPNHPFGG FGGFYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-19 | 114 | 179 | 8 | 75 | Disease resistance protein RRS1 |
5w3x_D | 3e-19 | 114 | 179 | 8 | 75 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00525 | DAP | Transfer from AT5G24110 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02463.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018454829.1 | 0.0 | PREDICTED: probable WRKY transcription factor 30 | ||||
Swissprot | Q9FL62 | 1e-152 | WRK30_ARATH; Probable WRKY transcription factor 30 | ||||
TrEMBL | A0A0D3E1H5 | 0.0 | A0A0D3E1H5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EA37 | 0.0 | A0A3P6EA37_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g013780.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12595 | 19 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 1e-145 | WRKY DNA-binding protein 30 |
Publications ? help Back to Top | |||
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