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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_02413.1_g00004.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
NAC |
| Protein Properties |
Length: 266aa MW: 30287.5 Da PI: 8.1821 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_02413.1_g00004.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 164.4 | 4e-51 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lp+GfrFhPtdeelv++yL+++++++++++ vi+e+d+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkat
Rsa1.0_02413.1_g00004.1 7 LPAGFRFHPTDEELVKFYLCRRCASEPISV-PVIAEIDLYKFNPWELPDMALYGEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKAT 91
799***************************.89***************6666689******************************* PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
g dk++ + ++ g+kk Lvfy g+apkg+kt+W+mheyrl
Rsa1.0_02413.1_g00004.1 92 GADKPIGK--PKKLGIKKALVFYAGKAPKGVKTNWIMHEYRL 131
******98..6789**************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001666 | Biological Process | response to hypoxia |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009507 | Cellular Component | chloroplast |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 266 aa
Download sequence Send
to blast |
MKAELNLPAG FRFHPTDEEL VKFYLCRRCA SEPISVPVIA EIDLYKFNPW ELPDMALYGE 60
KEWYFFSHRD RKYPNGSRPN RAAGTGYWKA TGADKPIGKP KKLGIKKALV FYAGKAPKGV 120
KTNWIMHEYR LANVDRSASS KKKNNLRLDD WVLCRIYNKK GTMEKYYPAD EKETAMMMTT 180
TTTTSDSKCS SHVISPDVTC SSEVQSESKW VDDLVEGVAF DASVFGSLLQ NDAFVPQFPY 240
HSDFAAMFED PPEQKPFLNW SFAPQG
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | May be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF974766 | 0.0 | KF974766.1 Brassica napus NAC transcription factor 102-1 (NAC102-1.1) mRNA, complete cds. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Takasaki H, et al.
SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
Plant J., 2015. 84(6): p. 1114-23
[PMID:26518251] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network.
Science, 2017.
[PMID:27811239] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
Plant Cell, 2018. 30(1): p. 178-195
[PMID:29317470]
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