PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02362.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 313aa MW: 32825.9 Da PI: 6.8034

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02362.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.8e-09	158	202	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L Rsa1.0_02362.1_g00004.1 158 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 202 99*********************55......9************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-14	151	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.802	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-14	155	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-6	158	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-10	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MASNNNPHGN LSDQTPSDDF FDQILGLPNF SASSSDGGLG GGGGGGAPPM MLQLGSGEEG 60 SHMGGGGLGV GGSGPTGFHN QMFPLGLSLD QGKGHGFLRP EGGGGGHGSV NRSSSSSSMK 120 GPVFHGQPMQ QPAPAAPHQP TSIRPRVRAR RGQATDPHSI AERLRRERIA ERIRALQELV 180 PTVNKTDRAA MIDEIVDYVK FLRLQVKVLS MSRLGGAGAV APLVTDMPLS SSVEDETSDG 240 GRTPQPAWEK WSNDGTERQV AKLMEENVGA AMQLLQSKAL CMMPISLAMA IYHSQPPDTS 300 SVVKPETNPP PPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	167	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02362.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352765	0.0	AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018462142.1	0.0	PREDICTED: transcription factor UNE12-like
Swissprot	O22768	1e-169	UNE12_ARATH; Transcription factor UNE12
TrEMBL	M4C9J3	0.0	M4C9J3_BRARP; Uncharacterized protein
STRING	Bra000872.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-139	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]