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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_02322.1_g00006.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
bZIP |
Protein Properties |
Length: 350aa MW: 37777.2 Da PI: 4.8851 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_02322.1_g00006.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 70.6 | 2.4e-22 | 246 | 308 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
e+elkr++rkq+NRe+ArrsR+RK+ae++eL++++++L +eN +L+ e+++lk ++++l +e+
Rsa1.0_02322.1_g00006.1 246 ERELKRQKRKQSNRESARRSRLRKQAECDELAQRADVLNGENASLRAEINKLKSQYEELLAEN 308
89*********************************************************9987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MVGSEMEKTG QENEPKTPPP PPVTSQEPSS SSAVSAGMST TPDWSGFQAY SPMPPHGYVA 60 SSPQPHPYMW GVQHMMPPYG TPPHPYVAMY PPGGMYSHPS LPPGSYPYSP YAMPSPNGMA 120 EASGNTEGDG KQAEEHQLME LVLKGIAESA SDGSSEGSDA NSQNDSGSRN NGKDASDSAH 180 GPPPRNGSNH QPVNQIVPIM PTGVPGPPTN LNIGMEYWSG HGNVSTTVPG VVVDGSSQSQ 240 TWIQDERELK RQKRKQSNRE SARRSRLRKQ AECDELAQRA DVLNGENASL RAEINKLKSQ 300 YEELLAENNS LKNRFPSQEG VNLDKNEQEP EASTRQDVAE TTYGSYNNSA
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 262 | 268 | RRSRLRK |
2 | 262 | 269 | RRSRLRKQ |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT004147 | 1e-128 | BT004147.1 Arabidopsis thaliana clone RAFL16-02-K13 (R50047) putative G-Box binding protein (At1g32150) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G32150.1 | 1e-137 | basic region/leucine zipper transcription factor 68 |