|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Rsa1.0_02298.1_g00003.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
Family |
WRKY |
Protein Properties |
Length: 169aa MW: 19125.2 Da PI: 6.7177 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_02298.1_g00003.1 | genome | RGD | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 98.6 | 4e-31 | 108 | 165 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
ldDg++WrKYG+K+vk+s++pr+YY+C+ gCpvkk+ver+++dp++v++tYeg+Hnh
Rsa1.0_02298.1_g00003.1 108 LDDGFKWRKYGKKMVKNSPHPRNYYKCAADGCPVKKRVERDKDDPSFVITTYEGSHNH 165
59******************************************************** PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:0050832 | Biological Process | defense response to fungus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 169 aa
Download sequence Send
to blast |
MNDSETNLAR SFSDDTHSGF ELPDLYLSDE WMDDDLVSVV SGMNHSYGYQ TSDHDAHASS 60 VLFSGSSGTF IHPASPSTIA SAENQIKKEK KKVKERVAFK TRSDVEVLDD GFKWRKYGKK 120 MVKNSPHPRN YYKCAADGCP VKKRVERDKD DPSFVITTYE GSHNHCNMY
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | FJ012170 | 1e-142 | FJ012170.1 Brassica napus WRKY50 transcription factor (WRKY50) mRNA, complete cds. |