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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_02285.1_g00005.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
bZIP |
Protein Properties |
Length: 359aa MW: 40462.5 Da PI: 6.8568 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_02285.1_g00005.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 33.1 | 1.2e-10 | 134 | 191 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l+ + l se
Rsa1.0_02285.1_g00005.1 134 KRAKRIMANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLSLFQRDTTGLSSE 191
9*****************************************9999887776666665 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MDDPSNTKPN QCPPLSTPAP SSTPFRGPYH RRAHSEVHFR LPEDLDLSEP FGGFDELGSE 60 DDLFCSYMDI ENKLGSGSDS AGPSAAPRSE AENSRPRHRH SLSVDGGSST LESIEAKKAM 120 APDKLAELWV VDPKRAKRIM ANRQSAARSK ERKARYIMEL ERKVQSLQTE ATTLSAQLSL 180 FQRDTTGLSS ENTELKLRLQ VMEQQAKLRD ALNDQLKKEV ERLKFATGEV SHADAYNLGM 240 AHMQYSQQQQ QPQQQQQSFF QHHHHHHHQQ QQQQTDAQNM QQMTHQFHLF QPNNNNHNHN 300 QNPQLMHHAT SNASGQSHSF AEAMHEDHLG RLQGLDISSC GRGSNFGRSD TVSESSSTM
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Functional Description ? help
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Source |
Description |
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY074269 | 1e-155 | AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds. |
GenBank | AY096746 | 1e-155 | AY096746.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds. |
GenBank | Z86093 | 1e-155 | Z86093.1 A.thaliana mRNA for b-Zip DNA binding protein. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Pawar V, et al.
A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] - Gibalová A, et al.
Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] - Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]
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