PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02265.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 447aa    MW: 48579 Da    PI: 6.993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02265.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.7e-063373761054
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              + R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  Rsa1.0_02265.1_g00008.1 337 KARKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 376
                              67889999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.741327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0012333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-11337390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-5339381No hitNo description
Gene3DG3DSA:4.10.280.107.8E-10341385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKISSSA STSSSMKASS IESGGSNVFH DKLHHHDHHS LATHDHHLQM  60
IGLGLSSQSP IDQWNQSLLR GDSKAETSFG VMLQENLNLD ATSNANAVQE SDSSHHQALW  120
RDTHTNNSDF KPQLNMTSSN RGFFLEHQFS PHGSSSTDSS TVTCQGFGVD NSSNTLYGTS  180
TTPSSSSAMF HQGAGFNLPG SSDQQPSRNH HQPNLGYSQF GSSTGNYDHM ATALPSTWFS  240
RSSPPKPHSP LRFSNNATFW NPAATAGNVG PTHHDASPNF FPALQPPQIH APTSFDEQKN  300
ITKVPNSRSN EAKRDGGGQP AAKRAKSEAP SPSPASKARK EKMGDRIAAL QQLVSPFGKT  360
DAASVLSEAI EYIKFLHQQV SALSNPYMKS GSSLQHQQSD HHKELEVSEE PDLRSRGLCL  420
VPVSSIFPVT HDTTVDFWTP TFGGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02265.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491364.10.0PREDICTED: transcription factor bHLH123-like isoform X1
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A3P5Z7X70.0A0A3P5Z7X7_BRACM; Uncharacterized protein
STRINGBra035761.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]