PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02254.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 139aa    MW: 16385.7 Da    PI: 8.4349
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02254.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.2e-193892357
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                             k+ ++t+eql+ Le  F+++++++ +++ +L+k+lgL+ rq+ vWFqNr+a++k+
  Rsa1.0_02254.1_g00003.1 38 KKKKMTSEQLKLLEISFQEEMKLDPDRKMKLSKELGLQPRQIAVWFQNRKARWKN 92
                             67899************************************************95 PP
2HD-ZIP_I/II112.62.6e-3638128292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kk+++++eq+klLE sF+ee kL+p+rK++l++eLglqprq+avWFqnr+AR+k+kqlE+ ye+L++++d + +e++ L++ev +L
  Rsa1.0_02254.1_g00003.1  38 KKKKMTSEQLKLLEISFQEEMKLDPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDVVCREKKLLQEEVIQL 123
                              9************************************************************************************* PP

              HD-ZIP_I/II  88 reelk 92 
                              r+ ++
  Rsa1.0_02254.1_g00003.1 124 RSLIR 128
                              98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-192295IPR009057Homeodomain-like
PROSITE profilePS5007116.1473393IPR001356Homeobox domain
SMARTSM003892.1E-173897IPR001356Homeobox domain
PfamPF000461.9E-163892IPR001356Homeobox domain
CDDcd000865.71E-153894No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2040100IPR009057Homeodomain-like
PRINTSPR000315.2E-56473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000315.2E-57389IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MVETQGGPLH EHYYAAPPAM VESSYGEASN TVNGYETKKK KMTSEQLKLL EISFQEEMKL  60
DPDRKMKLSK ELGLQPRQIA VWFQNRKARW KNKQLEHLYE SLRQEFDVVC REKKLLQEEV  120
IQLRSLIREN GSQQTWETA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00049PBMTransfer from AT2G36610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02254.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062824e-68AC006282.4 Arabidopsis thaliana chromosome 2 clone F13K3 map g6825, complete sequence.
GenBankAC0069194e-68AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankCP0026854e-68CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ0565694e-68DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438770.16e-99PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X1
RefseqXP_018438771.15e-99PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X2
RefseqXP_018438780.16e-99PREDICTED: homeobox-leucine zipper protein ATHB-22-like
SwissprotQ4PSR72e-64ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBLA0A397ZEC79e-85A0A397ZEC7_BRACM; Uncharacterized protein
TrEMBLM4CM221e-84M4CM22_BRARP; Uncharacterized protein
STRINGBra005259.1-P2e-85(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36610.19e-67homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]