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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_02254.1_g00003.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
HD-ZIP |
Protein Properties |
Length: 139aa MW: 16385.7 Da PI: 8.4349 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_02254.1_g00003.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60.2 | 3.2e-19 | 38 | 92 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
k+ ++t+eql+ Le F+++++++ +++ +L+k+lgL+ rq+ vWFqNr+a++k+
Rsa1.0_02254.1_g00003.1 38 KKKKMTSEQLKLLEISFQEEMKLDPDRKMKLSKELGLQPRQIAVWFQNRKARWKN 92
67899************************************************95 PP
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2 | HD-ZIP_I/II | 112.6 | 2.6e-36 | 38 | 128 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
kk+++++eq+klLE sF+ee kL+p+rK++l++eLglqprq+avWFqnr+AR+k+kqlE+ ye+L++++d + +e++ L++ev +L
Rsa1.0_02254.1_g00003.1 38 KKKKMTSEQLKLLEISFQEEMKLDPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDVVCREKKLLQEEVIQL 123
9************************************************************************************* PP
HD-ZIP_I/II 88 reelk 92
r+ ++
Rsa1.0_02254.1_g00003.1 124 RSLIR 128
98765 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 139 aa
Download sequence Send
to blast |
MVETQGGPLH EHYYAAPPAM VESSYGEASN TVNGYETKKK KMTSEQLKLL EISFQEEMKL 60 DPDRKMKLSK ELGLQPRQIA VWFQNRKARW KNKQLEHLYE SLRQEFDVVC REKKLLQEEV 120 IQLRSLIREN GSQQTWETA
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC006282 | 4e-68 | AC006282.4 Arabidopsis thaliana chromosome 2 clone F13K3 map g6825, complete sequence. |
GenBank | AC006919 | 4e-68 | AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence. |
GenBank | CP002685 | 4e-68 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
GenBank | DQ056569 | 4e-68 | DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds. |