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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02235.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 159aa MW: 18542 Da PI: 8.4866 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.5e-17 | 36 | 80 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+W +eEd +l +a +++ g+W++Ia++++ +Rt++qc+ rw ++ Rsa1.0_02235.1_g00003.1 36 GKWAKEEDAKLREAMAEHEIGNWSKIASHVP-RRTDNQCRRRWMQL 80 89*****************************.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-6 | 17 | 36 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.83E-23 | 17 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.677 | 30 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 34 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-16 | 36 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.57E-14 | 37 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-19 | 37 | 81 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MEKDASPYQN EDREIQTSTQ CREKWANYLD PNVNHGKWAK EEDAKLREAM AEHEIGNWSK 60 IASHVPRRTD NQCRRRWMQL YPHQVPLLQE ATRLRKQATV GNFVDRESQR PALLECKFLA 120 LPEIPLEPEP ETVGLKKKKR KARTKKSDAE CESEANSVC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 140 | KKKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02235.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489681.1 | 4e-71 | PREDICTED: snRNA-activating protein complex subunit 4 isoform X1 | ||||
Refseq | XP_018489683.1 | 3e-71 | PREDICTED: snRNA-activating protein complex subunit 4 isoform X2 | ||||
Refseq | XP_018489684.1 | 3e-72 | PREDICTED: myb-like protein L isoform X3 | ||||
TrEMBL | A0A397ZEI1 | 7e-67 | A0A397ZEI1_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P5ZJI7 | 1e-65 | A0A3P5ZJI7_BRACM; Uncharacterized protein | ||||
STRING | Bra022280.1-P | 2e-66 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 9e-43 | myb domain protein 4r1 |