PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02198.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 339aa    MW: 37521.1 Da    PI: 7.5972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02198.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-051032123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C+k F++  +L  Hir H
  Rsa1.0_02198.1_g00003.1 10 YVCKFCNKKFPSGKSLGGHIRIH 32
                             9********************99 PP
2zf-C2H211.60.000886986320
                             ETTTTEEESSHHHHHHHH CS
                  zf-C2H2  3 CpdCgksFsrksnLkrHi 20
                             C  Cg++F +   L +H+
  Rsa1.0_02198.1_g00003.1 69 CRECGEVFDSLKALWNHM 86
                             99***************9 PP
3zf-C2H211.10.0012289311123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+C ++F++   L  H r+H
  Rsa1.0_02198.1_g00003.1 289 HECPICFRVFKSGPALGGHKRSH 311
                              79***********9999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.2E-7234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.53E-7534No hitNo description
PfamPF139125.7E-61028IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2191037IPR007087Zinc finger, C2H2
SMARTSM003550.00361032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SMARTSM003558.46791IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.73E-56889No hitNo description
PROSITE patternPS0002806891IPR007087Zinc finger, C2H2
SuperFamilySSF576675.73E-5284311No hitNo description
PfamPF139122.1E-8289311IPR007087Zinc finger, C2H2
PROSITE profilePS501578.767289311IPR007087Zinc finger, C2H2
SMARTSM003550.1289311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280291311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
METITTEKEY VCKFCNKKFP SGKSLGGHIR IHTSLHSNSN SGKKPKKKNK QRSVEQREIT  60
ALRQHQLCCR ECGEVFDSLK ALWNHMDCCC HCEGEKLVMD NETTTSSGST RKRSKKQSCS  120
ESFSNWSSSS SSACEIDQEH RNTALSLMML SMDPRGLTLV LNSLVAELSS VNNSDILETK  180
LSSGEQLKMI FNVAVDDQLR SAANGAILTD SYSSDSDYFM NGPKRSDSDI SVDGCLRNNG  240
DDDFEAKEGR SQYELRNSKN VALPCNETDS CADTNMKEAI SAKKSSKGHE CPICFRVFKS  300
GPALGGHKRS HFIGNLEHRI KHKAAADMGI DLNLPAQDI
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02198.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934802e-38AB493480.1 Arabidopsis thaliana At1g26610 mRNA for hypothetical protein, partial cds, clone: RAAt1g26610.
GenBankCP0026842e-38CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K72e-38AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460431.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A078JBU71e-126A0A078JBU7_BRANA; BnaA08g19790D protein
TrEMBLA0A3P6BM631e-126A0A3P6BM63_BRACM; Uncharacterized protein
TrEMBLM4DIF11e-126M4DIF1_BRARP; Uncharacterized protein
STRINGBra016278.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.17e-74C2H2-like zinc finger protein