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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_02176.1_g00006.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MIKC_MADS |
Protein Properties |
Length: 208aa MW: 24517.4 Da PI: 10.0251 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_02176.1_g00006.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 94.2 | 6.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien + rqvtfskRrng+lKKA+ELSvLCda+v++i+fs++g+lye+ss
Rsa1.0_02176.1_g00006.1 9 KKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQVSLIVFSQRGRLYEFSS 59
68***********************************************96 PP
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2 | K-box | 51.3 | 5.1e-18 | 125 | 185 | 37 | 97 |
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
+llG++L+s+sl+eLq++ qL++sl ++R++K +l++eq+e+l+ kek+l een +L++k
Rsa1.0_02176.1_g00006.1 125 KLLGQELSSCSLQELQEIDCQLQRSLGEVRARKAQLFKEQLEKLKAKEKQLLEENVQLHQK 185
79*********************************************************98 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.254 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.5E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.52E-42 | 3 | 78 | No hit | No description |
PRINTS | PR00404 | 5.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.16E-32 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.795 | 87 | 201 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.0E-16 | 125 | 185 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQVSLIVFSQ RGRLYEFSSS 60 GMQNTIERYR KYKNDYETSY QDSEIYIQQL KQEASHMIAK IELLEFHKRK KSKLAFVVNV 120 CIYMKLLGQE LSSCSLQELQ EIDCQLQRSL GEVRARKAQL FKEQLEKLKA KEKQLLEENV 180 QLHQKNVIDS WRGSIDQQKK FRVIDLNL
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK228368 | 1e-115 | AK228368.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-79-M10. |
GenBank | AK318667 | 1e-115 | AK318667.1 Arabidopsis thaliana AT5G62165 mRNA, complete cds, clone: RAFL05-05-D12. |
GenBank | AY054220 | 1e-115 | AY054220.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds. |
GenBank | AY065206 | 1e-115 | AY065206.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds. |
GenBank | AY066035 | 1e-115 | AY066035.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds. |
GenBank | AY096509 | 1e-115 | AY096509.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds. |
GenBank | AY141213 | 1e-115 | AY141213.1 Arabidopsis thaliana MADS-box protein AGL42 mRNA, complete cds. |