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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02176.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 208aa MW: 24517.4 Da PI: 10.0251 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.2 | 6.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRrng+lKKA+ELSvLCda+v++i+fs++g+lye+ss Rsa1.0_02176.1_g00006.1 9 KKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQVSLIVFSQRGRLYEFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 51.3 | 5.1e-18 | 125 | 185 | 37 | 97 |
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +llG++L+s+sl+eLq++ qL++sl ++R++K +l++eq+e+l+ kek+l een +L++k Rsa1.0_02176.1_g00006.1 125 KLLGQELSSCSLQELQEIDCQLQRSLGEVRARKAQLFKEQLEKLKAKEKQLLEENVQLHQK 185 79*********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.254 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.5E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.52E-42 | 3 | 78 | No hit | No description |
PRINTS | PR00404 | 5.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.16E-32 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.795 | 87 | 201 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.0E-16 | 125 | 185 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQVSLIVFSQ RGRLYEFSSS 60 GMQNTIERYR KYKNDYETSY QDSEIYIQQL KQEASHMIAK IELLEFHKRK KSKLAFVVNV 120 CIYMKLLGQE LSSCSLQELQ EIDCQLQRSL GEVRARKAQL FKEQLEKLKA KEKQLLEENV 180 QLHQKNVIDS WRGSIDQQKK FRVIDLNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-18 | 1 | 78 | 1 | 78 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02176.1_g00006.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228368 | 1e-115 | AK228368.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-79-M10. | |||
GenBank | AK318667 | 1e-115 | AK318667.1 Arabidopsis thaliana AT5G62165 mRNA, complete cds, clone: RAFL05-05-D12. | |||
GenBank | AY054220 | 1e-115 | AY054220.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds. | |||
GenBank | AY065206 | 1e-115 | AY065206.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds. | |||
GenBank | AY066035 | 1e-115 | AY066035.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds. | |||
GenBank | AY096509 | 1e-115 | AY096509.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds. | |||
GenBank | AY141213 | 1e-115 | AY141213.1 Arabidopsis thaliana MADS-box protein AGL42 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455079.1 | 1e-132 | PREDICTED: MADS-box protein AGL42-like | ||||
Swissprot | Q9FIS1 | 1e-110 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | A0A078FVH4 | 1e-122 | A0A078FVH4_BRANA; BnaA09g05900D protein | ||||
TrEMBL | A0A3P5Y8H8 | 1e-122 | A0A3P5Y8H8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F4A7 | 1e-121 | M4F4A7_BRARP; Uncharacterized protein | ||||
STRING | Bra035907.1-P | 1e-122 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 2e-94 | AGAMOUS-like 42 |