PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02163.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 277aa    MW: 31502.1 Da    PI: 7.6762
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02163.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.75.7e-34134191259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  Rsa1.0_02163.1_g00007.1 134 EDGYRWRKYGQKAVKNSSYPRSYYRCTTQKCNVKKRVERSFQDPSMVITTYEGKHNHP 191
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-35118193IPR003657WRKY domain
SuperFamilySSF1182905.75E-30125193IPR003657WRKY domain
PROSITE profilePS5081132.099128193IPR003657WRKY domain
SMARTSM007748.6E-40133192IPR003657WRKY domain
PfamPF031061.7E-26134191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MADHKNSSLE EKSFTSLTDC LQSSLVMDYN SLEKVFNNSS PFQPISPSNM GQIRNYPYLN  60
LNPNSPIVSS SSIEADPKES LGDKSGSMED NEGDQHGVGE SSKQLTKQGK EKGEKKEREA  120
RVAFMTKSEI DHLEDGYRWR KYGQKAVKNS SYPRSYYRCT TQKCNVKKRV ERSFQDPSMV  180
ITTYEGKHNH PIPSTLRGPV VSEHLLGHRG SCLFHRDHSF PRQHQEFLVM NQPPVNYQSV  240
GSKSYECTHL NNSNHQEVVD YGLLQDIVPS MLLKHES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-29123194778Probable WRKY transcription factor 4
2lex_A3e-29123194778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02163.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463617.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ93WV41e-126WRK71_ARATH; WRKY transcription factor 71
TrEMBLA0A078GIK71e-158A0A078GIK7_BRANA; BnaA09g26610D protein
TrEMBLA0A397Y5L21e-158A0A397Y5L2_BRACM; Uncharacterized protein
STRINGBra032340.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139111825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-120WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  2. Yu Y, et al.
    WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana.
    Plant J., 2016. 85(1): p. 96-106
    [PMID:26643131]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Yu Y, et al.
    WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(2): p. 414-422
    [PMID:29272465]