PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02117.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 367aa    MW: 41537.4 Da    PI: 4.3384
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02117.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07314357345
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                              +W+t E +   ++ +++G + Wk+I  + +   +Rt  ++k++++
  Rsa1.0_02117.1_g00002.1 314 PWSTAETLAVMKGYEKYGAD-WKRIKDECPilVRRTNGDIKDKFR 357
                              8*******************.**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.4E-6309360IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-7309362IPR009057Homeodomain-like
SMARTSM007170.0058311362IPR001005SANT/Myb domain
CDDcd116601.62E-10313361No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MALSQWKEAI LEGIFMEIEE GLVEEKNLER LENLVEILHK EGSRVPESVK ESYCQVAVEC  60
TVRSLTDEKD AKEAYAEAIR SIWLRRVMPL CDKVSCLVTR DLLNSCKKLW TAYGDDEACE  120
ALMEENTREK ALDSLRKVVS ELHPEIEYDY GERDGDVDDS EECSEETIDT EPMEEDEEGV  180
LSSDIDEERP CGVVEAESPS RRMKTISSAV VAEALEKLRG SKNDLMDALA EVGGPSNLNV  240
TSIVQHENDV ADPAASVKLN LMERRTTAET YEWKDSIDDS DGETGDEGEV RGERVVVSPW  300
KRNQGGGGRR TKIPWSTAET LAVMKGYEKY GADWKRIKDE CPILVRRTNG DIKDKFRVEM  360
RRQEHHP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02117.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195341e-58AY519534.1 Arabidopsis thaliana MYB transcription factor (At1g06910) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486401.10.0PREDICTED: uncharacterized protein LOC108856983
TrEMBLA0A397Y5N40.0A0A397Y5N4_BRACM; Uncharacterized protein
STRINGBra031545.1-P0.0(Brassica rapa)
STRINGBo8g114370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.11e-119TRF-like 7