PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02108.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 287aa    MW: 32495.2 Da    PI: 5.4223
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02108.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.5e-1878131356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Rsa1.0_02108.1_g00008.1  78 KKRRLNMEQVKTLEKNFEIGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 131
                              456899***********************************************9 PP
2HD-ZIP_I/II131.24e-4277169193
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++d+lk+en+ L++++++
  Rsa1.0_02108.1_g00008.1  77 EKKRRLNMEQVKTLEKNFEIGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDSLKAENDLLQTHNQK 162
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelke 93 
                              L++e+++
  Rsa1.0_02108.1_g00008.1 163 LQTEIMS 169
                              **99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.04E-1967135IPR009057Homeodomain-like
PROSITE profilePS5007117.29773133IPR001356Homeobox domain
SMARTSM003897.1E-1876137IPR001356Homeobox domain
PfamPF000462.1E-1578131IPR001356Homeobox domain
CDDcd000863.05E-1678134No hitNo description
Gene3DG3DSA:1.10.10.602.9E-1980140IPR009057Homeodomain-like
PRINTSPR000311.1E-5104113IPR000047Helix-turn-helix motif
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5113129IPR000047Helix-turn-helix motif
PfamPF021835.3E-16133174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSCNNGMSFF PSNFMIQSSY EDLPPSLSPL LPSCSIPQDL HGFASFLGKR SPIEGLEAGN  60
IMNGEEDYSD DGSQTGEKKR RLNMEQVKTL EKNFEIGNKL EPERKMQLAR ALGLQPRQIA  120
IWFQNRRARW KTKQLEKDYD TLKRQFDSLK AENDLLQTHN QKLQTEIMSL KNREQTESIN  180
LNKETEGSCS NRSDNSSDNL RLDISTAPPS IDSTITGGHP PAPQTIGRHF FPPSPATATT  240
TTTTMQFFQN PSSGQSMVKE ENSISNMFCA MDDHSGFWPW LDQQQYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02108.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533110.0AK353311.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-O11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449256.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13
RefseqXP_018471072.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC030.0ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A1J3FD230.0A0A1J3FD23_NOCCA; Homeobox-leucine zipper protein ATHB-13 (Fragment)
TrEMBLA0A1J3J0R40.0A0A1J3J0R4_NOCCA; Homeobox-leucine zipper protein ATHB-13
STRINGAT1G69780.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-172HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]