PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02096.1_g00005.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 697aa MW: 79317.1 Da PI: 6.2956

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02096.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.1	6.2e-23	78	171	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkl 81 ++Y ++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke +w+v+++ Rsa1.0_02096.1_g00005.1 78 EYYTAFARRNGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLSKEIvaangATQWYVSQF 162 69******************8888.************************************9998655556789** PP FAR1 82 eleHnHela 90 ++ HnH l Rsa1.0_02096.1_g00005.1 163 SNVHNHVLL 171 ****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-21	78	171	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-20	305	398	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	574	612	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-6	578	611	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-4	587	614	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MASKPLNNIW IRRQQCPCGD WKCYIRLDGD ESTTTTYNNA TKSEIEPSTT PSPSPSSSSP 60 LFTPYVGQIF RTDDEAFEYY TAFARRNGFS IRKARSTESQ NLGVYRRDFV CYRSGFNQPR 120 KKANVEHPRE RKSVRCGCDA KLYLSKEIVA ANGATQWYVS QFSNVHNHVL LEDEHVRLLP 180 AYRKIQQCDQ ERILLLSKAG FPVNRIVKLL ELERGGGGVE LPFIEKDVRN FVRACKKSVQ 240 ESDALLNERR ESDLMELLES CKVFVGERGD VGFVYEFTSD ESGRVESLAW AYGECVQGYS 300 VFGDVVVFDT SYRSVTYGLI LGVFFGMDGN GNAVLLGCVL LQDESCRSFA WALQTFVRFM 360 RGGHPQTIVT DIDRGLKDAV ERELPNTNHV VFMWHVVSKL GSWFSQTLGS HYDEFRAGFE 420 MLCRAGSVEE FEQQWDLLIS RFGLVPDRHA ALLYSCRATW SPCYIRQHFL AQTMTPEFSL 480 SIDSFLKRIV AGPSCMQALL EEVSVAASLS KQITPRVPYP SMKTCMPMED HARAVLTPYA 540 FSVLQNEMVL SLQYAVAEMA NGPHIVHHFK KMERECCVFW NPENEEIHCS CKEFEHSGIL 600 CRHSLRVLAV KNCFHIPEQY FLVRWRQESS LVSEENQNGM GIGDDDCVQT FQSLTETLLT 660 ESMVSKDRLD YTNQELSALI DRVRNVAPAN TCISHDC

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MASKPLNNIW IRRQQCPCGD WKCYIRLDGD ESTTTTYNNA TKSEIEPSTT PSPSPSSSSP  60
LFTPYVGQIF RTDDEAFEYY TAFARRNGFS IRKARSTESQ NLGVYRRDFV CYRSGFNQPR  120
KKANVEHPRE RKSVRCGCDA KLYLSKEIVA ANGATQWYVS QFSNVHNHVL LEDEHVRLLP  180
AYRKIQQCDQ ERILLLSKAG FPVNRIVKLL ELERGGGGVE LPFIEKDVRN FVRACKKSVQ  240
ESDALLNERR ESDLMELLES CKVFVGERGD VGFVYEFTSD ESGRVESLAW AYGECVQGYS  300
VFGDVVVFDT SYRSVTYGLI LGVFFGMDGN GNAVLLGCVL LQDESCRSFA WALQTFVRFM  360
RGGHPQTIVT DIDRGLKDAV ERELPNTNHV VFMWHVVSKL GSWFSQTLGS HYDEFRAGFE  420
MLCRAGSVEE FEQQWDLLIS RFGLVPDRHA ALLYSCRATW SPCYIRQHFL AQTMTPEFSL  480
SIDSFLKRIV AGPSCMQALL EEVSVAASLS KQITPRVPYP SMKTCMPMED HARAVLTPYA  540
FSVLQNEMVL SLQYAVAEMA NGPHIVHHFK KMERECCVFW NPENEEIHCS CKEFEHSGIL  600
CRHSLRVLAV KNCFHIPEQY FLVRWRQESS LVSEENQNGM GIGDDDCVQT FQSLTETLLT  660
ESMVSKDRLD YTNQELSALI DRVRNVAPAN TCISHDC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02096.1_g00005.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433527.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A3N6TAF3	0.0	A0A3N6TAF3_BRACR; Uncharacterized protein
STRING	Bo2g152930.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]