PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02020.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family FAR1
Protein Properties Length: 739aa    MW: 84927.1 Da    PI: 7.0006
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02020.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.61.2e-2416103291
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleH 85 
                              +Y++YAk++GF + k +s++s+ ++e+++++f C ++g++++++++     ++ra+ ++gCka+++vk++    gkw+v+++++eH
  Rsa1.0_02020.1_g00004.1  16 YYKNYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRPdgGGKWYVYSFVEEH 97 
                              8****************************************99887....9*******************98899*********** PP

                     FAR1  86 nHelap 91 
                              nHel p
  Rsa1.0_02020.1_g00004.1  98 NHELLP 103
                              ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-2216103IPR004330FAR1 DNA binding domain
PfamPF105513.6E-24220311IPR018289MULE transposase domain
PROSITE profilePS5096610.744498534IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-9504532IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-8509536IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MLTQMEFDTH EDAYTYYKNY AKSAGFGTAK LSSRRSRASK EFIDAKFSCI RYGSKQQSDD  60
AINPRASPKI GCKASMHVKR RPDGGGKWYV YSFVEEHNHE LLPDQAHFFR SHRIAAESDP  120
RLRRKKNNNG PLLADSKHLS AYHDLGFLDC GYAARSQHDK GRRLAIESPD AQILLEFLMR  180
MQEENRNFFY AVDLNEDNVL RNVFWVDAKG IGDYRSFNDV VSFDTSYVVS KYKLPLVVFV  240
GVNHHVQPVL LGCGLMGDET VYSYVWLMQS WLMAMGGLMP KVMLTDQDGA VKAAVSAVLS  300
ETRHCYCLWY VLDRLPRNLD YWSMWQEAFL KKFFKCVCGS WSEEEFDRRW MKLMDKFHLR  360
DVEWMRCLYD ERSFWAPAFM RGVTFAGLST RYRSESVNSV FDRYVQGETS VKEFLEGYGV  420
MLEDRYEEEA KADFDAWHEA PELKSPSPFE KQVLLVYTHV VFRKFQLEVL GAAACHLTKE  480
SEEGTTYSVK DFEDDQKYMV EWDESKSDIY CSCRCFEYKG YLCRHAIVVL QMSGVFTIPI  540
NYVLQRWTNA ARNRHQISGN LELVQSNIRR FNDLCRRAII LGEEGSLSQE SYDVAMFAMK  600
EAFKQCAVKV NTIGYPTRCE EAAVQPGDHI HEDNQYGSTS KQIGLEHDMQ HASGQGETRR  660
EKRSSLNNTS KKPKHVMQSG TIGEGSQEGF QHVVAAPRPF QAGLAAQFHS TIPAVFQNVI  720
PAEFHNIPAT NMHQNNPPG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02020.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446587.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A3N6QL140.0A0A3N6QL14_BRACR; Uncharacterized protein
STRINGBo6g120360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]