PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01955.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 201aa    MW: 22185 Da    PI: 7.5642
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01955.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.5e-2093127135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++C tt+TplWR+gp g+k+LCnaCG++++k+++
  Rsa1.0_01955.1_g00009.1  93 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 127
                              ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.46887123IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-1987139IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-1387127No hitNo description
Gene3DG3DSA:3.30.50.109.3E-1791127IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.72E-1392124No hitNo description
PROSITE patternPS00344093118IPR000679Zinc finger, GATA-type
PfamPF003201.7E-1793127IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MMGYQTNPNF SMFFSLENDD QNNQDYDSYN NISSSTSVDC TLSLGTPSTR LDDHRRFSSA  60
SSNISGDYFY HGGNAKTTSY KKGGGDHNLP RRCASCDTTS TPLWRNGPKG PKSLCNACGI  120
RFKKEERRAT ARNSITSGGG SSAAEIPAGG NYYTHQHHHY ASSSPSWAHQ NTQRVQYFSP  180
APEMEYPFVD DATAASFLSW N
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01955.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436878.11e-150PREDICTED: GATA transcription factor 20
SwissprotQ9ZPX01e-111GAT20_ARATH; GATA transcription factor 20
TrEMBLA0A078FFA31e-137A0A078FFA3_BRANA; BnaC07g03390D protein
TrEMBLA0A0D3D3191e-137A0A0D3D319_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DUE11e-137A0A3P6DUE1_BRAOL; Uncharacterized protein
STRINGBo7g010220.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-97GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]