PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01955.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 303aa    MW: 35009.4 Da    PI: 8.6044
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01955.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-05248270123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+Cp+C+ +F ++  +  H+ +H
  Rsa1.0_01955.1_g00002.1 248 YTCPKCNGVFDTSQKFAAHMTSH 270
                              9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-4236272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.39248275IPR007087Zinc finger, C2H2
SMARTSM003550.0086248270IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSSSPNIFST YGDDTTNYHG FVPNFRNHNS KSTARSIFTT SDHMNDRGLF SSSPSFSCYQ  60
NSHVSSSSLE FDNSYMNYHM RRDSDCVLGA NCFPITNNPQ YSQVSFTQTI TNRFSAIFPS  120
NQIYNIQNDI ACVQHDMDFK TNMWNRSTLY PSTFLDKNCG ILNPKPVNVI PHEDSPYRQH  180
LDMFSSSSKH NHDLHVLQEG QSSRKSPKPA KSHETTNDYY SSDEDGRSED VQYDGRTHSL  240
TYKKYGPYTC PKCNGVFDTS QKFAAHMTSH YKNETNKERD ERYRARIKKK YRKLRNNIHG  300
GYL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01955.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435854.10.0PREDICTED: uncharacterized protein LOC108808167
TrEMBLA0A3P6AW850.0A0A3P6AW85_BRACM; Uncharacterized protein
STRINGA0A087HDL41e-113(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42640.12e-92C2H2 family protein