PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01951.1_g00008.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 1648aa MW: 180701 Da PI: 6.7673

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01951.1_g00008.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.1	1.5e-11	858	899	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e+++ +++G++ +k+Ia+++ +t +c+++++k Rsa1.0_01951.1_g00008.1 858 PWTPEEKEIFLSMLAMHGKD-FKKIASYLT-QKTTADCIDYYYK 899 8***************99.****9.9********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.03E-15	841	902	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.184	854	905	IPR017884	SANT domain
SMART	SM00717	2.1E-10	855	903	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-10	857	899	IPR001005	SANT/Myb domain
CDD	cd00167	1.09E-8	858	900	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.7E-8	858	904	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.307	1067	1118	IPR017884	SANT domain
SMART	SM00717	1.0E-5	1068	1116	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.73E-8	1071	1118	IPR009057	Homeodomain-like
CDD	cd00167	2.81E-5	1072	1113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1648 aa Download sequence Send to blast
MPPQDHSSWD RKDLLRQRKH ERPSEPPFDP PPFRWRDSSS SSSSHRDFNS RWGGSSDFRR 60 PSSCKIPYLI IFSLIIDHGK QGGRYPFAEE SSHGYTSSRS SARMFENDYY RPSAPRGDWR 120 YTRNCRDDRV PLNNKDWRCN TWEMNNGSSR AFERPCGVRN GRRSVEDRPP ASDSHTSVVN 180 SWEPSNSAQQ MDIELCTPVR TVRFKNEQKF SDQRQSLPSD PHADGPGLFD RPSSVNSYEN 240 KECSPAKQTN GLMYGRRLAD DNPPVLNAEI EGTRNQILLK EDNKLHGVSD LDGVRENGKE 300 NSLGATGKLP VWTRSGSFAS QSSGFSHSSS LKSLGAVDSS DRELKILPKT VAVTQSSSGD 360 ATACAKTTLS EEMSSRKKQR LGWGEGLAKY ENKKVDVNTT EDGTDLLENS AEELHSLNKS 420 IADKSPTAAN APDYGSPTTP SSVACNSSPD KSSAKGAIGA SDVSNMCLSP SPVSSIHLER 480 LPINIEELDN ISMERVGCLL KELLGTDDPG TGDSSSVQLT SMNKLLAWKG DILKAVEMAE 540 SEIDLLESKQ RALKLESGRQ CRVVKHASEG DENVQQEASC NLGLKAVASS VAETLVRDPV 600 HQAAKVPSEI IEDSCREVNS LCHFLATVGS NEDILPIPST KADANQETID LSSADDSMVS 660 DEKLLGAKLL STNKTYACES SQVFNKMLPR DFSSFDYSRF PGICQRQFDS HVKEKIADRI 720 ELLRAREKIL LLQFKAFQLA WKKDVRQLAS AKYQPKANKR TEVFPYAKNG GHLKFSQPVR 780 LRLSSSASRR DSVASTTELV GYMKKLLKNT RLKPFRDILR MPAMILDEKE RVRSRFISSN 840 GLIEDPCDVE KERTMINPWT PEEKEIFLSM LAMHGKDFKK IASYLTQKTT ADCIDYYYKN 900 HKSDCFGKIK KQRGYGKEGK HTYMLAPTKK WKREMGAASL DILGAVSIIA ANAGKASTRQ 960 TSSKRITLRG CSSSSSLQRD GNYSEGYSHS FDFPRKRTLG ADVVAVGPLS SEQINSCLRT 1020 SVNSREGCMD HLKFAPAAKK PRISHTTHNE NSNEDDDSCS DESCGETGPI HWTDAERSAF 1080 IQGFSQFGKN FASLSRFVRT RSPDQCRVFF SKVRKCLGLE CIQSGSGNVS TSASVDNAIE 1140 GGGSDLEGPC ATESNSGICN NGVSATIGLD THTSPVNMNQ ERANHSGFEN VEAGLSRSEQ 1200 ENGLALLRLK DVTNLVDAAS IPGQVSEPCR DLVDINTVES SHCQAADQIN SNDLLSKEIN 1260 EGNSTSVAAE ETKSSDQLST EIDEGNLTPV AVSSDPLYCG SLVLPNNIVE KGSGCEGAAL 1320 PNQSSKMQDG VMQAANRTIN SGLEAEAAPS SFRYLECLHH VPIEEDLVGV VSVPQGDSNC 1380 HTESELPNPL VVQTNKMGWQ FSEVNLDLER GSQVLGHIKA EQNGQLNATS TDSCQIPWIS 1440 FTQDPSRIIR SKSDLIVKAQ RTGEAFSLRK CTSSATKPLT VFQKDGRSGH SRSHSFSLSN 1500 TERLDKNGDV KLFGTVLTAD ENGSKQKHNP GGSIRSSSTL SRDHETGNQY INQQHLQNVP 1560 ITSYGFWDGN RIQTGLTSLP ESAKLLASYP EALTTHLEQQ VVSTKDIQLD ASGVLSFGKH 1620 IEDRAEVSSG KDKGKIGGEI TGVAEAAT

Sequence ? help Back to Top

Protein Sequence Length: 1648 aa Download sequence Send to blast

MPPQDHSSWD RKDLLRQRKH ERPSEPPFDP PPFRWRDSSS SSSSHRDFNS RWGGSSDFRR  60
PSSCKIPYLI IFSLIIDHGK QGGRYPFAEE SSHGYTSSRS SARMFENDYY RPSAPRGDWR  120
YTRNCRDDRV PLNNKDWRCN TWEMNNGSSR AFERPCGVRN GRRSVEDRPP ASDSHTSVVN  180
SWEPSNSAQQ MDIELCTPVR TVRFKNEQKF SDQRQSLPSD PHADGPGLFD RPSSVNSYEN  240
KECSPAKQTN GLMYGRRLAD DNPPVLNAEI EGTRNQILLK EDNKLHGVSD LDGVRENGKE  300
NSLGATGKLP VWTRSGSFAS QSSGFSHSSS LKSLGAVDSS DRELKILPKT VAVTQSSSGD  360
ATACAKTTLS EEMSSRKKQR LGWGEGLAKY ENKKVDVNTT EDGTDLLENS AEELHSLNKS  420
IADKSPTAAN APDYGSPTTP SSVACNSSPD KSSAKGAIGA SDVSNMCLSP SPVSSIHLER  480
LPINIEELDN ISMERVGCLL KELLGTDDPG TGDSSSVQLT SMNKLLAWKG DILKAVEMAE  540
SEIDLLESKQ RALKLESGRQ CRVVKHASEG DENVQQEASC NLGLKAVASS VAETLVRDPV  600
HQAAKVPSEI IEDSCREVNS LCHFLATVGS NEDILPIPST KADANQETID LSSADDSMVS  660
DEKLLGAKLL STNKTYACES SQVFNKMLPR DFSSFDYSRF PGICQRQFDS HVKEKIADRI  720
ELLRAREKIL LLQFKAFQLA WKKDVRQLAS AKYQPKANKR TEVFPYAKNG GHLKFSQPVR  780
LRLSSSASRR DSVASTTELV GYMKKLLKNT RLKPFRDILR MPAMILDEKE RVRSRFISSN  840
GLIEDPCDVE KERTMINPWT PEEKEIFLSM LAMHGKDFKK IASYLTQKTT ADCIDYYYKN  900
HKSDCFGKIK KQRGYGKEGK HTYMLAPTKK WKREMGAASL DILGAVSIIA ANAGKASTRQ  960
TSSKRITLRG CSSSSSLQRD GNYSEGYSHS FDFPRKRTLG ADVVAVGPLS SEQINSCLRT  1020
SVNSREGCMD HLKFAPAAKK PRISHTTHNE NSNEDDDSCS DESCGETGPI HWTDAERSAF  1080
IQGFSQFGKN FASLSRFVRT RSPDQCRVFF SKVRKCLGLE CIQSGSGNVS TSASVDNAIE  1140
GGGSDLEGPC ATESNSGICN NGVSATIGLD THTSPVNMNQ ERANHSGFEN VEAGLSRSEQ  1200
ENGLALLRLK DVTNLVDAAS IPGQVSEPCR DLVDINTVES SHCQAADQIN SNDLLSKEIN  1260
EGNSTSVAAE ETKSSDQLST EIDEGNLTPV AVSSDPLYCG SLVLPNNIVE KGSGCEGAAL  1320
PNQSSKMQDG VMQAANRTIN SGLEAEAAPS SFRYLECLHH VPIEEDLVGV VSVPQGDSNC  1380
HTESELPNPL VVQTNKMGWQ FSEVNLDLER GSQVLGHIKA EQNGQLNATS TDSCQIPWIS  1440
FTQDPSRIIR SKSDLIVKAQ RTGEAFSLRK CTSSATKPLT VFQKDGRSGH SRSHSFSLSN  1500
TERLDKNGDV KLFGTVLTAD ENGSKQKHNP GGSIRSSSTL SRDHETGNQY INQQHLQNVP  1560
ITSYGFWDGN RIQTGLTSLP ESAKLLASYP EALTTHLEQQ VVSTKDIQLD ASGVLSFGKH  1620
IEDRAEVSSG KDKGKIGGEI TGVAEAAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	3e-16	816	906	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	3e-16	816	906	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01951.1_g00008.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439451.1	0.0	PREDICTED: uncharacterized protein LOC108811843
TrEMBL	A0A3N6PNK1	0.0	A0A3N6PNK1_BRACR; Uncharacterized protein
STRING	Bo8g080840.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5260	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein