PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01949.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 280aa MW: 31291.1 Da PI: 8.4905 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.7e-19 | 134 | 188 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ +++ LAkklgLt rqV vWFqNrRa+ k Rsa1.0_01949.1_g00003.1 134 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 188 677889***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.8 | 1.6e-39 | 134 | 223 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke +e Rsa1.0_01949.1_g00003.1 134 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTDENRRLEKEAAE 219 69************************************************************************************ PP HD-ZIP_I/II 87 Lreel 91 Lr +l Rsa1.0_01949.1_g00003.1 220 LR-AL 223 *9.54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.0E-24 | 2 | 99 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 4.2E-18 | 116 | 188 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.61E-19 | 118 | 191 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 130 | 190 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-17 | 132 | 194 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-16 | 134 | 188 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.43E-16 | 134 | 191 | No hit | No description |
PRINTS | PR00031 | 7.4E-6 | 161 | 170 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 165 | 188 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.4E-6 | 170 | 186 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 1.2E-23 | 190 | 233 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 8.3E-8 | 190 | 224 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MMMGNEDLSL SLSLGFAQTH HPLKLNLKPT SSPISNLQMF PWNQTFVSSS DHQNQQSLRK 60 IDVNSLPSTV DLEEETRVSS PNSTISSTVI SGKRRSEREG TSGGAGDDLD ITLDGSSSRG 120 TSSEEEEYGG EACRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF 180 QNRRARTKLK QTEVDCEYLK RCVEKLTDEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL 240 TCPSCERVSG SSNHNQRSVS LSPWLQTSHG LTFDVMHPRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 190 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01949.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595686.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT1 | ||||
Swissprot | P46600 | 1e-180 | HAT1_ARATH; Homeobox-leucine zipper protein HAT1 | ||||
TrEMBL | A0A0D3DEL4 | 0.0 | A0A0D3DEL4_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g105120.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1563 | 26 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17460.1 | 1e-157 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
Publications ? help Back to Top | |||
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