PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01894.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 1546aa MW: 173421 Da PI: 8.2018 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 4.1e-31 | 1472 | 1529 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk ver +ed ++v++tYeg+Hnh Rsa1.0_01894.1_g00003.1 1472 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKSVERLSEDCRMVITTYEGRHNH 1529 59******************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14244 | 2.5E-16 | 52 | 96 | IPR029472 | Gag-polypeptide of LTR copia-type |
Pfam | PF03732 | 1.6E-18 | 113 | 221 | IPR005162 | Retrotransposon gag domain |
Pfam | PF13976 | 2.0E-10 | 513 | 584 | IPR025724 | GAG-pre-integrase domain |
PROSITE profile | PS50994 | 18.566 | 595 | 758 | IPR001584 | Integrase, catalytic core |
SuperFamily | SSF53098 | 6.83E-38 | 595 | 752 | IPR012337 | Ribonuclease H-like domain |
Gene3D | G3DSA:3.30.420.10 | 1.7E-24 | 596 | 750 | IPR012337 | Ribonuclease H-like domain |
Pfam | PF00665 | 9.8E-17 | 597 | 709 | IPR001584 | Integrase, catalytic core |
SuperFamily | SSF56672 | 1.45E-35 | 966 | 1170 | No hit | No description |
Pfam | PF07727 | 4.7E-45 | 967 | 1080 | IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase |
Pfam | PF07727 | 1.6E-26 | 1082 | 1191 | IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase |
SuperFamily | SSF56672 | 1.45E-35 | 1201 | 1382 | No hit | No description |
CDD | cd09272 | 2.05E-65 | 1276 | 1407 | No hit | No description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-32 | 1457 | 1529 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-27 | 1464 | 1529 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.471 | 1467 | 1529 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.8E-37 | 1472 | 1531 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.9E-24 | 1473 | 1529 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1546 aa Download sequence Send to blast |
MVVTRRSTRR LGRSTTASAR RSSIPEDSSP VDSDTDELSP NSIHSPYYLT SGDNPGLSIV 60 SEVLDGTNYD NWSIAMNIAL DAKNKLAFID GSVARPLESH VHFRIWSRCN SMVKSWLLNT 120 VSKQIYKSIL RFNDTSEIWK DLQTRFHITN LPRSYQLSQQ ILSLQQGSMD LATYYTTLKT 180 LWDELDGANC ITTCRNCDCC KAMNTKADHA KVIKFLAGLN ESYAVIRSQI IMKKNVPELS 240 EIYNLLDQDH NQRNIIPVHN ATTFQVSAPS APPAPKQGRP VCSHCGYNGH TVDTCYKIHG 300 YPVDFKHKGK QQSDRTQYKK PPAKPVVAQV ALDDKSSATG FGTLTKDQIE GVIAYFNSQL 360 SPPPAQVNCV STSGGTITAL PGMVFSSSTL GFIGMLRMTG NVLCTESWVV DSGATHHVAH 420 DRHLFEELSD SVNTSVTLPT GFGVKISGIG KVRLSDSMVL TNVLFIPDFC LNLLSVSQTT 480 KDLGYRIAFD HDCCMIQDLT KGLMIGKGDQ IANLYVLDVA DIAVPRPLQD QLASVSNVVL 540 DSALWHHRLG HPSMLKTDSI IDVLGLQHKN KGAYHCDICP LAKQKRLPFK SNNNMTDHPF 600 DLLHIDVWGP FSTPTIEGYR YFLTIVDDHT RLTWIYLLKA KSDVLSVFPA FLKLVETQYQ 660 AVVKAVRSDN APELRFEELY KQKGIVSFHS CPETPEQNSV VERKHQHILN VARALMFQSQ 720 VPLELWGECV LTAVFLINRL PSPLLKDKSP LELLTSKPVD YTGLRVFGCL TYCTTSPKQR 780 TKFQPRARSC IFLGYPAGYK GYKLMDLETN QIFISRNVIF HEDIFPYTKG KLSCFHDIFS 840 STAVSDNSTL ASEEINGISD STTPPPAVVP DASAAESSGS RSIPESTKRI SKLPAHLEDY 900 YCNVNELNKD IPYPLSAYLT YDNLSTEYKA YICSVALYPE PTSFTQAKRF EEWLHAMNEE 960 LIALEKNDTW TVCSLPPGKH AIGCKWVYKI KINADGTLER YKARLVAKGY TQQEGIDFAE 1020 TFSPVAKMTT VKTLVAVSAA KNWHLTQLDV SNAFLNGDLH EEIYMKLPPG YTPRKGKLCL 1080 RMLTTLLGLG FQKSNSDHTL FIRNIKGHYI AVLVYVDDII IASNVTEDVD QLKADLQKAF 1140 KIRDLGPLKY FLGLEIARSV QGISMCQRKY TLGLLEEAGL LACKPSLIPM DPGVKLIQDS 1200 PEPLLDDPCA YRRLVGKMMY LTITRPDITF AVNKLCQFTS APKPSHLQAA YKVLHYLKGT 1260 IGLGLFYSST SDLVLKGYTD ADWGSCADTR RSTSGYCMFL GNTLISWKSK KQQVASHSSA 1320 ESEYRAMEFG SREVIWLYNL LIELQAPQAR PVPYYCDSTA AIHIAHNSVF HERTKHIERD 1380 CHQIRDCIEA GYIKMLHVRT HDQIADVGGP LGSKVVNNDH ENIRGGINND VHSNSWWRSS 1440 SGSGEMKNKV KIRRKLREPR FCFQTKSDVD VLDDGYKWRK YGQKVVKNSL HPRSYYRCTH 1500 NNCRVKKSVE RLSEDCRMVI TTYEGRHNHI PSDDSTSPDH DCLSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-24 | 1464 | 1529 | 9 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 9e-24 | 1464 | 1529 | 9 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1450 | 1456 | KIRRKLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01894.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430034 | 0.0 | KF430034.1 Brassica rapa WRKY transcription factor 12 (WRKY12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009128559.1 | 0.0 | PREDICTED: uncharacterized protein LOC103853393 | ||||
TrEMBL | A0A1J3H6S5 | 0.0 | A0A1J3H6S5_NOCCA; Retrovirus-related Pol polyprotein from transposon TNT 1-94 | ||||
STRING | Bra008452.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 1e-78 | WRKY family protein |