PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01884.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 319aa    MW: 36245.7 Da    PI: 4.2983
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01884.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.28.4e-2013103199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffkv+   + ++s  + +pk+f e+ + +   ++t +l+   g +W+v +  +k ++  ++t+GW++F+++++Lk+g+f++F +dg
  Rsa1.0_01884.1_g00006.1  13 FFKVF--LSETASESMAIPKSFSEHLQDP--LPQTAKLQGMGGGVWTVSF--KKIRDCAYFTSGWSKFAEDHELKDGEFLTFVYDG 92 
                              88999..666777779******9655655..889****************..99998899************************99 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                              +++f   v+vf +
  Rsa1.0_01884.1_g00006.1  93 SHTF--EVSVFGR 103
                              8888..8888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-268106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-249106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.31111104IPR003340B3 DNA binding domain
CDDcd100171.32E-2011101No hitNo description
PfamPF023626.4E-1713102IPR003340B3 DNA binding domain
SMARTSM010192.2E-2313104IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-8189267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-5189267IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSESEEEVDL PRFFKVFLSE TASESMAIPK SFSEHLQDPL PQTAKLQGMG GGVWTVSFKK  60
IRDCAYFTSG WSKFAEDHEL KDGEFLTFVY DGSHTFEVSV FGRSGCKEMR AIVETVNLSD  120
ANSDEEEEEE DSSVAADSDE EEEEEGDDDP SFDAGEDDEV SQGLCPVDSD ETVSNAEVVA  180
GFSSLEVESN PCFTTTLKNR IYELLIPAIV VKEHRLTFCD RIKYIDGEGI MYGAKEKWSD  240
DRICFKGWDR ICRRNRLKEF DVVHCEMLHI YQEESSLNQD HNHTWTLNHS SSSSSSSPHP  300
SSITHHHHHY HEIYGFCLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-191210610104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01884.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892221e-125AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681597.11e-174B3 domain-containing protein REM20-like
RefseqXP_018442734.11e-173PREDICTED: B3 domain-containing protein REM20-like isoform X1
SwissprotQ8LAV54e-94REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A0D3B4181e-168A0A0D3B418_BRAOL; Uncharacterized protein
STRINGBo3g023970.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.14e-89B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]