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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01861.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 428aa MW: 46922.2 Da PI: 8.6975 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.8 | 1.4e-06 | 108 | 127 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+f+ + G Ck Gd C+F H+ Rsa1.0_01861.1_g00002.1 108 CKFWKA-GNCKKGDHCSFLHS 127 ******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.130.10.10 | 1.5E-41 | 62 | 100 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-6 | 101 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-5 | 102 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.497 | 107 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 1.5E-41 | 133 | 424 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 1.7E-4 | 133 | 172 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 9.16E-41 | 133 | 181 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 13.917 | 140 | 181 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 17.798 | 140 | 344 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF11715 | 1.7E-5 | 155 | 188 | No hit | No description |
PROSITE pattern | PS00678 | 0 | 159 | 173 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 2.5E-7 | 159 | 173 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 75 | 212 | 249 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 9.16E-41 | 219 | 424 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 7.2E-4 | 257 | 295 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 4.9E-5 | 261 | 295 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 10.475 | 279 | 304 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 282 | 296 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 2.5E-7 | 282 | 296 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 4.7E-4 | 298 | 335 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.028 | 300 | 334 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 2.5E-7 | 322 | 336 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 4.8 | 385 | 422 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MSYYKAPRRY SKERNFGVER QQGFASDIVP RRPYDNRMNI KGPNKWSRNL VWTASDGNMP 60 RKNDCTYALS SYQQRKDAAY GQRSSYASYV KGWGSSDKGS PKSKDCVCKF WKAGNCKKGD 120 HCSFLHSWTS LPGMVMVAAL EGHKKGLKGI ALPQGSDKLF SASSDGTLRI WDCHTGQCVH 180 TIHLQAEAGS LMSEGPWVFL GLPNAVKAFN VQTSKDLHLN GVVGQVRAMT VGNGMLFAGT 240 SSGSISVWKA TDTESDPFTY LTSLEGHHSG EVTCFIVGGQ RLYSGSVDKT IKVWDLNTLE 300 CTMTLRQHTD TVTSLLCWDQ YLISSCLDGT INVWACSENG SLKVTNTRRQ GQSVHTLCGM 360 SDAEGKPIMF CSYQNGTVSI CDLPSFEERG KMFSTNTVGT ITIGPEGLLF TGDKSGKLCV 420 WSLAGTKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 3e-17 | 140 | 423 | 11 | 323 | Tako8 |
6g6n_A | 3e-17 | 140 | 423 | 11 | 323 | Tako8 |
6g6n_B | 3e-17 | 140 | 423 | 11 | 323 | Tako8 |
6g6n_C | 3e-17 | 140 | 423 | 11 | 323 | Tako8 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01861.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018479748.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 59-like, partial | ||||
Swissprot | Q9FKR9 | 0.0 | C3H59_ARATH; Zinc finger CCCH domain-containing protein 59 | ||||
TrEMBL | A0A3P6C1Y0 | 0.0 | A0A3P6C1Y0_BRACM; Uncharacterized protein (Fragment) | ||||
STRING | Bo4g140040.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4048 | 18 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40880.1 | 0.0 | C3H family protein |