PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01855.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 316aa    MW: 34852.9 Da    PI: 9.7116
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01855.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.77.8e-33159214258
                CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  Rsa1.0_01855.1_g00009.1 159 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 214
                              9****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-38156217IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.879157217IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.6E-27159214IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-24160182IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860162182IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.6E-24191214IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNKKDSTLPY LNTSISWGAV PTEPLSLKVV DARPEHTTKQ ISFQDQDSSS TQSTCQSYTD  60
VASSGDDIPS RQISFLTKSG SEETQQKGFA TTHPKPSSMT GLPSIHFAPT HANFTFHYGD  120
PHFGGGVLAA TYLPQTCNPQ MVGMVPGRVP LPVEITETEP VFVNAKQYHA IMRRRQQRAK  180
LEAQNKLIKA RKPYLHESRH VHALKRPRGS GGRFLNTKKP LQESQQAAAA KEQEESKKAN  240
MSRFEAHMLQ HNKDRSSTTS GSDITSASDG VDIFGHTGFQ FSGFQTTQTN RAMLVNGHQS  300
NDMHGGGDLH HFSVHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-20159218362NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01855.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453580.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
SwissprotQ93ZH21e-172NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A3N6S5I10.0A0A3N6S5I1_BRACR; Uncharacterized protein
STRINGBo2g079060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-153nuclear factor Y, subunit A3