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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01853.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 144aa MW: 15821.6 Da PI: 6.2641 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.2e-07 | 74 | 110 | 3 | 39 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 +WT+ E+++++ + ++ G+g+ k+I+r + k Rt+ q Rsa1.0_01853.1_g00008.1 74 AWTESEHKRFLLGLQRVGKGDSKAISRNFVKSRTPTQ 110 7*********************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.95E-7 | 69 | 110 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-8 | 70 | 110 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.8E-5 | 73 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.71E-4 | 74 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MLFGVRVVVD PMRKCVSLNN LSDYEKSSPE EEIPKIGDAE DKTEPDAGYA SANDAVQIPS 60 SSVGNHRERK QGVAWTESEH KRFLLGLQRV GKGDSKAISR NFVKSRTPTQ DAAPLSLNLS 120 LSFNLNEPSN SRHSMMPSFS DGDI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01853.1_g00008.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC068602 | 3e-35 | AC068602.2 Genomic sequence for Arabidopsis thaliana BAC F14D16 from chromosome I, complete sequence. | |||
GenBank | AK316815 | 3e-35 | AK316815.1 Arabidopsis thaliana AT1G19000 mRNA, complete cds, clone: RAFL08-11-F04. | |||
GenBank | AY045881 | 3e-35 | AY045881.1 Arabidopsis thaliana putative Myb-related transcription activator protein (At1g19000) mRNA, complete cds. | |||
GenBank | AY079415 | 3e-35 | AY079415.1 Arabidopsis thaliana putative Myb-related transcription activator protein (At1g19000) mRNA, complete cds. | |||
GenBank | AY088105 | 3e-35 | AY088105.1 Arabidopsis thaliana clone 41381 mRNA, complete sequence. | |||
GenBank | CP002684 | 3e-35 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013599652.1 | 3e-59 | PREDICTED: transcription factor MYB1R1-like isoform X1 | ||||
Refseq | XP_013599653.1 | 2e-59 | PREDICTED: transcription factor MYB1R1-like isoform X2 | ||||
Swissprot | Q2V9B0 | 4e-36 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A0D3DWJ5 | 4e-59 | A0A0D3DWJ5_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g102960.1 | 6e-60 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2461 | 26 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19000.2 | 2e-57 | MYB_related family protein |
Publications ? help Back to Top | |||
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