PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01853.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 521aa    MW: 57697.8 Da    PI: 6.713
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01853.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.6e-30232291159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+
  Rsa1.0_01853.1_g00001.1 232 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDMSILISTYEGTHNHP 291
                              58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-31217293IPR003657WRKY domain
SuperFamilySSF1182907.45E-27225293IPR003657WRKY domain
PROSITE profilePS5081128.334227293IPR003657WRKY domain
SMARTSM007743.3E-35232292IPR003657WRKY domain
PfamPF031063.9E-26233291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MENEDFLRSS GHGREERHED TRKLISSSDD SHQEHNLIIR SKLESIRVEM EEAKEENRRL  60
KSSLNRTKRD FEILQIQYNQ LMVQHEDPNK FSPKSHHQDK DKDEDKGNIS KREELVLLSL  120
GSMTNKEEKG KGLMDEIGDR KQIDEHDKRN EQGLSMGLEY KDLSNPSEKL EIDHSQEKTT  180
LEVSNSNKIP SENSFGLKND GDDHEDEEEL LPQNLVKKTR VSVRSRCETP TMNDGCQWRK  240
YGQKIAKGNP CPRAYYRCTI APSCPVRKQV QRCSEDMSIL ISTYEGTHNH PLPASATAMA  300
AATSAAASML LSGASSSGAA DLHGLNFSLS GNPKPKSPSL QTSFSPSSSG HPTVTLDLTA  360
SSSSQQTFLS MLNRFSAPPS NVSRSNSYPS TNLNFSNNTN TLMNWGGSSG HLNEKYRAAY  420
GNIGTHQQSP YHHMIQTQPA GSSFDTFGRS SSSSLHPTKT NLDHVGIKNI THQVQSLPAE  480
TIKAITTDPS FQSALATALS SIMGGDLKMD NVTKDEAKES S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20219293174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01853.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436079.10.0PREDICTED: probable WRKY transcription factor 61
SwissprotQ8VWV60.0WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBLA0A078GAF50.0A0A078GAF5_BRANA; BnaA09g44440D protein
TrEMBLA0A3P5YSN30.0A0A3P5YSN3_BRACM; Uncharacterized protein
STRINGBo8g103030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126631729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.10.0WRKY DNA-binding protein 61
Publications ? help Back to Top
  1. Gao R,Liu P,Yong Y,Wong SM
    Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana.
    Sci Rep, 2016. 6: p. 24604
    [PMID:27086702]