PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 216aa MW: 24463.7 Da PI: 10.3952

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01850.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Rsa1.0_01850.1_g00007.1 59 FSCNYCKRKFYSSQALGGHQNAH 81 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.23E-6	56	86	No hit	No description
PROSITE profile	PS50157	11.406	59	86	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MLKIKKRGHQ DLELGLNLLP SATASSELNL IDSFETNSSS TSHHHHKNHQ EHLEDPRVFS 60 CNYCKRKFYS SQALGGHQNA HKRERTLAKR EQYYKMSLSS SAPYSAFAFG NCPVSRFASM 120 PSLPLLGSVN NRSTLGIRAH STTHDPFLGR PKASLSHVFK QSIHQKLSIG KMFPEKLHHD 180 VNSSNSTAPK LERIEHFKSK HEDNNQIKKI DLTLKL

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:24808098, ECO:0000305\|PubMed:8980531}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01850.1_g00007.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269\|PubMed:10794528}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232476	0.0	AC232476.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034F07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444639.1	1e-158	PREDICTED: zinc finger protein 1-like
Refseq	XP_018464624.1	1e-158	PREDICTED: zinc finger protein 1-like
Swissprot	Q42485	1e-101	ZFP1_ARATH; Zinc finger protein 1
TrEMBL	M4CH99	1e-104	M4CH99_BRARP; Uncharacterized protein
STRING	Bra003582.1-P	1e-105	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11858	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-103	zinc-finger protein 1

Publications ? help Back to Top
Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098]