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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01815.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HB-other | ||||||||
Protein Properties | Length: 933aa MW: 103584 Da PI: 8.675 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18.3 | 3.9e-06 | 59 | 115 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F+ + +s++e +e+++ g++ +qV+ +F +++k kk Rsa1.0_01815.1_g00004.1 59 KRPRDLLNPKAVKYMQTVFAIKDSISKKESREISALFGISVAQVRDFFATQKIKVKK 115 799***************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.151 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-4 | 58 | 120 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 59 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.12E-4 | 59 | 116 | No hit | No description |
SuperFamily | SSF46689 | 2.65E-5 | 59 | 124 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 933 aa Download sequence Send to blast |
MDDAFKEEIE IGSSVESLME LLNSQKMLFH SQIDQLQDAV VTQCKLTGAA GALSIKIGKR 60 PRDLLNPKAV KYMQTVFAIK DSISKKESRE ISALFGISVA QVRDFFATQK IKVKKQVRLS 120 REKLMMSTTH AIQGDGVMEQ NNAVPHAEPL PLNSIDPEAS SISCGEGETA ALMPKEDVQE 180 EGIPPDISDS DKYFVDNIFS MLRREETFLG QMKLMEWIMQ IQDSSVLIWF LSKGGVLILT 240 TWLSQAATEE QTSVLLLILK VLCHLPLHKA SPENMSAILQ SVNGLRFYRT SGVIPENVLC 300 CVSFINVKVR IVISLVSLSD LMIRHIKQGK SIAEIMGDKT NPEDILSISN GRSENGRRLK 360 SSQGPKLLLT SADDSTRKHM LGSTPSYNKE RRKVQMVEQP GQKAAGRGPQ TVRIGTSGRS 420 RPMSADDIQK AKMRALYMNS KNIKKDTLPS AIGDTRTVVP EKPLAIQSVK DSPPSQSNEA 480 KTENTPELSA VQFPPSQNNE AKTEDKPEPS AVQQPVTVNV LVQPVNSPAV NVPVQADEFR 540 NRKLSTPPKS ISSKVGVLSR MSPQTILKNC KREQIEWHVP PGMVLDELWR VAAGANSKEA 600 DVQKNRNRRE KETTYQSLQT IPLNPKEPWD REMDFDDSLT PEIPSQQPQE ESITEPQDSL 660 DERRTAAGAA STSSSQSSSV EPDYELLAAL LKNPDLLHAL TSGQPGNLAG QDMVKLLDVI 720 KTGAPNLSSS SNMKVEEQVE VSLPSPTPST NPGMSGWGQE VTRNPFSRQT QVGASVARMS 780 TRLRVASMQW QPSNGQSIPQ HTPSAYNSFT LPHTERQHQQ RMQPRLHQNQ HLQQQPISTT 840 SYVVRESVGK MDIGTSASWR SQQSQNSYYS HQANGIGSDA SYQGNEQYMT SSNPGYESWS 900 PDNSPSRNHP NMRGQQQPSR KHDPYWNQNK RWR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01815.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226746 | 0.0 | AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018471087.1 | 0.0 | PREDICTED: homeobox protein LUMINIDEPENDENS isoform X2 | ||||
Swissprot | Q38796 | 0.0 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A3N6SCE0 | 0.0 | A0A3N6SCE0_BRACR; Uncharacterized protein | ||||
STRING | Bo2g100790.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10876 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 0.0 | HB-other family protein |
Publications ? help Back to Top | |||
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