PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01801.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 401aa    MW: 46174.2 Da    PI: 6.7314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01801.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05153176123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              y+C+ Cg+ ++++ +Lk+H +  H
  Rsa1.0_01801.1_g00005.1 153 YVCGVCGRKCKTNLDLKKHFKQlH 176
                              9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10103.7E-573143IPR029060PIN domain-like
PROSITE profilePS5015710.679153181IPR007087Zinc finger, C2H2
PROSITE patternPS000280155176IPR007087Zinc finger, C2H2
CDDcd061671.87E-10167307No hitNo description
Gene3DG3DSA:3.40.50.10103.7E-5238292IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSLFCNSIET LYPKPSLLHK PHFFSLPDTN PSFAGFPRRR LRQQPPIIKS CLKPASSSEI  60
DMVRNKEGIF APKEKKVVVL WDLDNKPPRG PPYEAATALR RVAEKLGRVV EISAYANRHA  120
FVHLPHWVVE ERRSRRSLDF AERKGEVVPA EPYVCGVCGR KCKTNLDLKK HFKQLHERER  180
QKKVNRMRSL KGKKRKKFKE RYVSGNEKYN EAARRLLTPK VGYGLEAELR RAGVYVKTVE  240
DKPQAADWAV KRQIQHSMTR GIDWLVLVSD DKDFSDMLRK AREADLGTVV VSDRDGVLGR  300
QADLWVPWMG VENGEIGEKD LVPEKRRRFD DDEEVEVERE GDGLFSLLYD EDERGEMRVE  360
SDGFGRFSVS AFSEDEWVEE DEGDFALSDS DDDDSDDELG F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642PRRRLRQ
2192196KKRKK
3323328EKRRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01801.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324390.0AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473260.10.0PREDICTED: uncharacterized protein LOC108844493
TrEMBLA0A3P6AW040.0A0A3P6AW04_BRAOL; Uncharacterized protein
STRINGBo3g023500.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein