PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01783.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 188aa    MW: 20737.4 Da    PI: 10.1414
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01783.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702152.92.3e-47401784154
                   DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89 
                               ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++         ++        ++++++k+ + ++s+k    s  
  Rsa1.0_01783.1_g00009.1  40 EEKVCKDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSAATRS----SS--------SSSDRNKKLKLHSSDK--PKSVL 111
                              6789**************************************9765431....12........2233333333332222..23334 PP

                   DUF702  90 klssaeskkeletss.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                               +++++s++e+++++ lP +++++a+fr++rv++v++ +++e++Yq++v+i+GhvfkG+L+++G+++
  Rsa1.0_01783.1_g00009.1 112 IVPTTTSRQETSFKEgLPGKIEAPAIFRRTRVTAVSNnEQAEIGYQATVTISGHVFKGFLHYYGADH 178
                              4455555555555555*******************9868899**********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.0E-4542177IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.8E-274384IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.9E-28128175IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MLGLRNTIFL PQPPSQVTSS VNFAAVEENN KSSRNSSNVE EKVCKDCGNR AKKECLFERC  60
RTCCKSRGYN CATHVKSTWV PSSAATRSSS SSSDRNKKLK LHSSDKPKSV LIVPTTTSRQ  120
ETSFKEGLPG KIEAPAIFRR TRVTAVSNNE QAEIGYQATV TISGHVFKGF LHYYGADHNK  180
AFPCLSNK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01783.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486811.11e-125PREDICTED: protein SHI RELATED SEQUENCE 6-like
SwissprotQ9M2U41e-93SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBLA0A397YB201e-112A0A397YB20_BRACM; Uncharacterized protein
STRINGBra007072.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM119592332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.16e-86SHI-related sequence 6
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]