PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01745.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 333aa    MW: 37402.2 Da    PI: 7.0484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01745.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88.3e-08189235555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h+ +Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  Rsa1.0_01745.1_g00002.1 189 HSLAERARREKISKKMKYLQDLVPGC----NKVTGRAGMLDEIINYVQSLQ 235
                              999**********************9....66799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.25E-7182239No hitNo description
SuperFamilySSF474595.5E-16182252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.335184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16185253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5189235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-8190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSLSSMDVSV LERLKWLQQQ QQQQQQQQQV LSSTNASPEL LQFHGTNNDE LLQNTFSHFQ  60
MLRSGFGPNY SMGFGPSHEP MDGCISRTNS CQMDQADTVG VMLKNSEENI AFSLKSKRKS  120
EVKTRAEEKT EKKIKVEAET ESNMKVKSNL SNTEASSETS KQTSKGASEI QKLDYIHVRA  180
RRGQATDRHS LAERARREKI SKKMKYLQDL VPGCNKVTGR AGMLDEIINY VQSLQRQVEF  240
LSMKLAVLNP ELELAMEDLS VKQFQAYFTN LPVLVASKPS LMVDAPLFPL DQQGSLDLSV  300
INPNQATSIE APSASWETQS QSLYNTSSLG FQY
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01745.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533910.0AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434343.10.0PREDICTED: transcription factor HBI1
SwissprotQ9ZPW30.0HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A078GJ030.0A0A078GJ03_BRANA; BnaA07g02010D protein
STRINGBra039618.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.20.0bHLH family protein