PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01720.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 577aa    MW: 63683.6 Da    PI: 10.0573
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01720.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-134595248
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                             + W t+E++ll +avk++G+++W+++a+++     ++ ++ +c++++q+++
  Rsa1.0_01720.1_g00002.1 45 QVWGTWEELLLTCAVKRHGSKDWDSVAKEVVsrssLNASAPSCRLKYQDLK 95
                             68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.39E-64198IPR009057Homeodomain-like
SMARTSM007171.4E-74397IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-44594IPR009057Homeodomain-like
PfamPF002498.9E-124595IPR001005SANT/Myb domain
PROSITE profilePS500906.2144795IPR017877Myb-like domain
CDDcd001671.70E-74795No hitNo description
Gene3DG3DSA:1.20.920.109.8E-21248361IPR001487Bromodomain
SMARTSM002975.0E-21254363IPR001487Bromodomain
SuperFamilySSF473705.23E-20256361IPR001487Bromodomain
CDDcd043695.34E-18265358No hitNo description
PfamPF004391.6E-12267347IPR001487Bromodomain
PROSITE profilePS5001413.437273344IPR001487Bromodomain
PROSITE patternPS006330278336IPR018359Bromodomain, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MVREGDAVTS NGMNDDDYTT NIPSCSGSDK NRNGDGNGNL NQISQVWGTW EELLLTCAVK  60
RHGSKDWDSV AKEVVSRSSL NASAPSCRLK YQDLKRRFQD SVDDDDDGRG NNGAVAEDID  120
GEIPWLEQLR SLRVAELRRD VQRCDESILS LQLKVKKLEE EEKDGEDKPD LEDDSKTSNS  180
TASADHERLV GDKTVENSSN PHPDHKAAAA AVEEEEGTVS RRSGMSHSGE LGESGTSTVN  240
RKRKGNIYGG SGGNIKPDGN QSQPLMEIVK LIRSHPRGSV FETLLKSQET NDYKRVIRQH  300
MDIKTIEKKM EKGSYVSSSL SFYRDLKLLF TNAIVFFPTS SAESVAAHEL RTLVSNEMKK  360
TTGISSHRVI KSEGGSLISK QKSSAPPLVA CKKKTLPSSS SFKQKDEKKV SEEKDVTTTT  420
TRSSRRASKG VKVVAKDTKM GRAKNNNKKQ TDSSDDDADE KEETPKIEKK RASEKKKSVA  480
EFLKRIKNNS PQKGNETTSK DQKKSDGNVK NGKAKPRELR SNSTGKKKAE AENNGNKSSS  540
KRKQSKKEAE EVTAAATRKR GRESGKDNQQ PKKRSTG
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01720.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459094.10.0PREDICTED: uncharacterized protein LOC108829982
TrEMBLA0A3P6C7V40.0A0A3P6C7V4_BRACM; Uncharacterized protein
STRINGBo4g106310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-169DNA-binding bromodomain-containing protein