PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01701.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 209aa    MW: 23392.6 Da    PI: 7.9638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01701.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.2e-103685253
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
                      HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                             +  h  +Er+RR+++ + f+ Lr++lP       ++K   ++ +  Av++Ik+
  Rsa1.0_01701.1_g00015.1 36 KLLHRDIERQRRQEMATLFASLRTHLPLqY---IKGKRAVSDHVNGAVNFIKD 85
                             6679************************66...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-1231106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.5093486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-73685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-736104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.85E-73985No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDPYQRQRPF GSAGEGGSSG GSDMPREMDD NKKKKKLLHR DIERQRRQEM ATLFASLRTH  60
LPLQYIKGKR AVSDHVNGAV NFIKDTETRI KELSARRDEL SRETCQTYKS SPDPARTGSE  120
LGKSYPASVM VQPCVSGFEV AVSSNSSGPE ALPLSRVLET LQELGLEVIS CLTTRINERL  180
MHTIQVEVNS FGCLDLAWLQ QKLVEELIL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01701.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894151e-81AC189415.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468915.11e-155PREDICTED: transcription factor bHLH126-like isoform X1
RefseqXP_018468916.11e-155PREDICTED: transcription factor bHLH126-like isoform X1
SwissprotQ9STJ61e-112BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A3P6EWZ81e-148A0A3P6EWZ8_BRAOL; Uncharacterized protein
STRINGBra013889.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-115bHLH family protein