PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01692.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 397aa    MW: 41247.4 Da    PI: 8.7175
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01692.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702209.67.7e-651903503154
                   DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsals 87 
                              +gta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + +   + a +s  +++ +k++r    ++q+a+s
  Rsa1.0_01692.1_g00003.1 190 AGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTGNPTAAGSSPsTSSGTKKPRIA-GSQQQATS 274
                              6899**********************************************999888766666655367777777765.77777888 PP

                   DUF702  88 stklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                              +t++s++ ++++l+tss          +P +v+++avf+cv+v++++dg++e+aYq++v+igGh+fkG+LydqGle 
  Rsa1.0_01692.1_g00003.1 275 HTSTSNT-PPQSLDTSSsrkdggpreaWPGQVKAAAVFKCVKVTAMEDGDDEYAYQAVVKIGGHIFKGFLYDQGLEP 350
                              8887776.566777777799******************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-58192349IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.4E-26194236IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.1E-29300348IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MVYGSVATTR RHNLPTSDSG AFTDWTAAAA TPSSRATEDL SLGFNAGPAV VHGGLVSASA  60
AAGLPSWPPG SSVRYGLPSA AATEMGMVGL RDVYLVAPAY HHHHHQNAGL VSGSDQINSN  120
AAASLGVGVI PLLTAAPAQQ HQNVEDTDIN FLGNSRRWQN NDSSNNQREY LRFKSTTVAS  180
SSNNSGSGSA GTATCQDCGN QAKKECKQRR CRTCCKSRGF DCSTHVKSTW VSAARRRERQ  240
VMPTGNPTAA GSSPSTSSGT KKPRIAGSQQ QATSHTSTSN TPPQSLDTSS SRKDGGPREA  300
WPGQVKAAAV FKCVKVTAME DGDDEYAYQA VVKIGGHIFK GFLYDQGLEP KEGFPNISDL  360
LLGGGASNHN SVSASPSILD PPNVYGGGGG AGAGFYG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01692.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052660.0GU205266.1 Brassica rapa subsp. pekinensis lateral root primordium 1 (LRP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469892.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK91e-142LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A3N6S2330.0A0A3N6S233_BRACR; Uncharacterized protein (Fragment)
STRINGBo2g010890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.41e-149Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]