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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_01692.1_g00003.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
SRS |
Protein Properties |
Length: 397aa MW: 41247.4 Da PI: 8.7175 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_01692.1_g00003.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 209.6 | 7.7e-65 | 190 | 350 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsals 87
+gta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + + + a +s +++ +k++r ++q+a+s
Rsa1.0_01692.1_g00003.1 190 AGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTGNPTAAGSSPsTSSGTKKPRIA-GSQQQATS 274
6899**********************************************999888766666655367777777765.77777888 PP
DUF702 88 stklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+t++s++ ++++l+tss +P +v+++avf+cv+v++++dg++e+aYq++v+igGh+fkG+LydqGle
Rsa1.0_01692.1_g00003.1 275 HTSTSNT-PPQSLDTSSsrkdggpreaWPGQVKAAAVFKCVKVTAMEDGDDEYAYQAVVKIGGHIFKGFLYDQGLEP 350
8887776.566777777799******************************************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 397 aa
Download sequence Send
to blast |
MVYGSVATTR RHNLPTSDSG AFTDWTAAAA TPSSRATEDL SLGFNAGPAV VHGGLVSASA 60 AAGLPSWPPG SSVRYGLPSA AATEMGMVGL RDVYLVAPAY HHHHHQNAGL VSGSDQINSN 120 AAASLGVGVI PLLTAAPAQQ HQNVEDTDIN FLGNSRRWQN NDSSNNQREY LRFKSTTVAS 180 SSNNSGSGSA GTATCQDCGN QAKKECKQRR CRTCCKSRGF DCSTHVKSTW VSAARRRERQ 240 VMPTGNPTAA GSSPSTSSGT KKPRIAGSQQ QATSHTSTSN TPPQSLDTSS SRKDGGPREA 300 WPGQVKAAAV FKCVKVTAME DGDDEYAYQA VVKIGGHIFK GFLYDQGLEP KEGFPNISDL 360 LLGGGASNHN SVSASPSILD PPNVYGGGGG AGAGFYG
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU205266 | 0.0 | GU205266.1 Brassica rapa subsp. pekinensis lateral root primordium 1 (LRP1) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G12330.4 | 1e-149 | Lateral root primordium (LRP) protein-related |