 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_01656.1_g00010.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 305aa MW: 34218.3 Da PI: 4.6491 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_01656.1_g00010.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.8 | 4.3e-19 | 71 | 124 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k
Rsa1.0_01656.1_g00010.1 71 KKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 124
56689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 130 | 9.3e-42 | 70 | 162 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
ekkrrls eqvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk+++d+lk+++++L+ ++++
Rsa1.0_01656.1_g00010.1 70 EKKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDSLKRSRDSLQLDNDS 155
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreelke 93
Lr+e+ke
Rsa1.0_01656.1_g00010.1 156 LRAEIKE 162
****997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MKRSRGSSDS LSGFLPICHS ATDKQLSPRP TATGFLYSGT GDYSPMFDCL EDGSLEDIAV 60
GHVSCTAATE KKRRLSVEQV KALEKNFEID NKLEPERKVK LAQELGLQPR QVAIWFQNRR 120
ARWKTKQLER DYGVLKSNFD SLKRSRDSLQ LDNDSLRAEI KELRAKLNVE GISRSNSNAS 180
TEESIFLKAD ETVMPNNEVL ELNQLPSQPL PHIPTEAPAS ELAYEMFSIF PRTEIFREDP 240
ADSSDSSAIL NEEYSPTAAE AAAATAVEMS TMGCFGHFVK MEEHEDLFSG EEACKLFADN 300
EQWYC
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 118 | 126 | RRARWKTKQ |
| 2 | 139 | 144 | DSLKRS |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353247 | 1e-168 | AK353247.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-D07. |
