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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_01629.1_g00002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 392aa MW: 45315.4 Da PI: 6.2301 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_01629.1_g00002.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 175.6 | 1.4e-54 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyW 83
+ppGfrFhPtdeelv++yL+kkv++k++e+ ++ik++d+yk+ePwdL + k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+W
Rsa1.0_01629.1_g00002.1 7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFIKDIDLYKIEPWDLLElcKIGHEEQsDWYFFSHKDKKYPTGTRTNRATKAGFW 91
69****************************.99**************7434554444459************************** PP
NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
katg+dk+++ +++l+g++ktLvfy grap+g+k+dW+mheyrle
Rsa1.0_01629.1_g00002.1 92 KATGRDKAIYL-RHSLIGMRKTLVFYMGRAPNGQKSDWIMHEYRLE 136
***********.8899****************************85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048759 | Biological Process | xylem vessel member cell differentiation |
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLLELCKIGH 60 EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YLRHSLIGMR KTLVFYMGRA 120 PNGQKSDWIM HEYRLETDEN GIPQEEGWVV CRVFKKRLPA VIRRMGDYDS SPSHWYDDQL 180 SFMASELETN GPRRLIPNHH QQHQQPLPYG LNASAYALNS PNLQCKQELE LQYNHLVQHH 240 HFLHESNLSP LQLPQFESSK IQLDNINCNS LSCGTSNNVN NSTDLANLQQ SNLPHEEQLN 300 QGNHSFSSLY MNGGNEQTME KVTDWRALDK FVASQLSNDE ADTASASLQN NAKDTSNLEH 360 QVDEEKDQKR VSDMGEEYAA STSSSCQIDL WK
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |