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Plant Transcription
Factor Database
|
Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_01603.1_g00006.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 351aa MW: 38414.2 Da PI: 8.4299 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_01603.1_g00006.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 173.7 | 5.3e-54 | 17 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrFhPtdeelvv+yLk+kv++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkat
Rsa1.0_01603.1_g00006.1 17 LPPGFRFHPTDEELVVHYLKRKVASAPLPV-AIIAEVDLYKFDPWELPAKASFGEREWYFFSPRDRKYPNGARPNRAATSGYWKAT 101
79****************************.88***************999999******************************** PP
NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
g+dk+vl++ ++++vg+kk Lvfy+g+ pkg+k+dW+mheyr+
Rsa1.0_01603.1_g00006.1 102 GTDKPVLASdGKQKVGVKKALVFYSGKPPKGVKSDWIMHEYRI 144
*******9967788***************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MESIESSGGP TPPQPNLPPG FRFHPTDEEL VVHYLKRKVA SAPLPVAIIA EVDLYKFDPW 60
ELPAKASFGE REWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVLAS DGKQKVGVKK 120
ALVFYSGKPP KGVKSDWIMH EYRIIDNKPN YRPPACDFAN KNSSLRLDDW VLCRIYKKNN 180
ASRHVDNDKD EGMIDYIFRK VPPSSSSGLH HNVSRSMNIF PGKSSGGYGI FSDGDSGLYD 240
GSSMVCSNGA GSVNVNVSNG NPNGLNPATS SGPMMMMANL KRALSPVAEE EQDASPSKRF 300
HCVGGGDCLN MSSSVMEETP PLMHQQGGVL GDDGLLRTAS YQLPGLNWYS S
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-74 | 14 | 183 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-74 | 14 | 183 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-74 | 14 | 183 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-74 | 14 | 183 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 5e-74 | 14 | 183 | 14 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 5e-74 | 14 | 183 | 14 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
