PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01593.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CPP
Protein Properties Length: 535aa    MW: 59426.6 Da    PI: 6.061
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01593.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.81.1e-13406442438
                      TCR   4 kgCnCkkskClkkYCeCfaagkkCsee..CkCedCkN 38 
                                CnC+kskCl+++CeCfaag++Cs e  C+C +C+N
  Rsa1.0_01593.1_g00006.1 406 GICNCEKSKCLQLFCECFAAGVYCSTEppCSCINCHN 442
                              56***********************9889*******9 PP
2TCR33.58.7e-11493532241
                      TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                              +++gCnCkkskC +k CeCf+ g+ Cs +C+C +C Nk++
  Rsa1.0_01593.1_g00006.1 493 HRRGCNCKKSKCSNKNCECFQGGVCCSTRCRCIECGNKNQ 532
                              789**********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM006670.01840IPR006594LIS1 homology motif
PROSITE profilePS508969.04840IPR006594LIS1 homology motif
SMARTSM006677.9E-478110IPR006594LIS1 homology motif
PROSITE profilePS508969.54978110IPR006594LIS1 homology motif
PfamPF085131.7E-782105IPR006594LIS1 homology motif
SMARTSM011141.4E-9402446IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.749404532IPR005172CRC domain
PfamPF036387.6E-11408442IPR005172CRC domain
SMARTSM011149.4E-8492533IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.6E-8495530IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MAQSDSEADK MLDVYIYDHL VKKKLHNIAK SFMTEGKVSL DHVGKAIDTP GGLLFEWWSM  60
FWDISIAKTK EKRSESAVEQ GLNVYIYDYL VKKKLYHTAE SFMPEVKSPP GHISINTPGG  120
FLSKWWFVFW DFFIARVTEK HYESVAQAQQ GEQMKQPNPV NTVASQPSMD AGTIHHGQMV  180
HGRYQGGVSP ALQSRTQQTP ENNSGVNLGA SPRQQDPLLS QQNNHKRART GNTVGPFNSQ  240
PSTPLTHTPN EGVAITGDMP KGPVMYGSDA IGGLASSANQ PMCDDMEAFE DLEDLEDKAE  300
WFLPQVDGNL QQSDMESFGA LEDVDIESVV TAINWNPSEF IEQAKEQEQM KQPNPMNTET  360
SQPHMDHGEM VDGNHQGGSV LASLQQLNPR TQQTPFEAGD GESRKGICNC EKSKCLQLFC  420
ECFAAGVYCS TEPPCSCINC HNIPIYKEDV LNSRKKIESR NPLAFAPKII SRSSDPVQET  480
RDDASKTPAS GHHRRGCNCK KSKCSNKNCE CFQGGVCCST RCRCIECGNK NQERK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01593.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476324.10.0PREDICTED: uncharacterized protein LOC108847556
RefseqXP_018476325.10.0PREDICTED: uncharacterized protein LOC108847556
RefseqXP_018476326.10.0PREDICTED: uncharacterized protein LOC108847556
RefseqXP_018476327.10.0PREDICTED: uncharacterized protein LOC108847556
TrEMBLA0A0D3B4J80.0A0A0D3B4J8_BRAOL; Uncharacterized protein
STRINGBo3g026760.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1948756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.14e-47TESMIN/TSO1-like CXC 2