PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01588.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 446aa MW: 50125.1 Da PI: 9.688 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 7.6e-08 | 133 | 174 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE +l ++++++ + ++ Ia ++++ Rt +++k+r+++ Rsa1.0_01588.1_g00011.1 133 WTKEETSQLFELCERFDLR-FTVIADRFPLPRTVEELKDRYYT 174 *******************.*********99**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16282 | 9.1E-30 | 105 | 179 | IPR032563 | DAMP1, SANT/Myb-like domain |
SMART | SM00717 | 6.7E-9 | 129 | 178 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.16E-7 | 129 | 182 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-6 | 132 | 177 | IPR009057 | Homeodomain-like |
Pfam | PF05499 | 2.2E-7 | 321 | 389 | IPR008468 | DNA methyltransferase 1-associated 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MGGTDAKDIL GLPKTPLSLS HEKKSRPQKE SHRKPDGISR EVYALTGGVA PLMPSIDVTH 60 LKRPPPPDEK VDWQWLPIKS SARKDDLQLF HWVRVVNGVP PTADYSFAKY NKSVDILKYT 120 DDEYENHLTD PLWTKEETSQ LFELCERFDL RFTVIADRFP LPRTVEELKD RYYTVTRALL 180 RARAQSPAEL ANHPLMKEPY DITRDRERKR ALSMVLSQSR HQEKKDAEIL AEAKRITEMR 240 LAARRAADLD VSGNENVGLD KADGGPGCSV SPSSNSQLPA TAVAPSTLTM ADYTSTLASL 300 RMLHVYLRTY GLEQMVQAAS SAVGLRTIKR VEQTLQDLGV NLKPKVPTKT VCDEHLELRK 360 EILTLLNLQK QLQYKESEGS SHREGTYAAM PDTPKDRVFA SEPFSFGGVS ADRPIKKEPK 420 RKGPGRQADT PSPAHKRPRK LKASDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3hm5_A | 5e-18 | 104 | 184 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 5e-18 | 104 | 184 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01588.1_g00011.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353019 | 0.0 | AK353019.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-J15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018485149.1 | 0.0 | PREDICTED: SWR1-complex protein 4-like | ||||
Swissprot | Q8VZL6 | 0.0 | SWC4_ARATH; SWR1-complex protein 4 | ||||
TrEMBL | A0A397ZY08 | 0.0 | A0A397ZY08_BRACM; Uncharacterized protein | ||||
STRING | Bo00954s060.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8543 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47210.1 | 0.0 | MYB_related family protein |
Publications ? help Back to Top | |||
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